NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTTCTTCTCTCATATGAGTCTTTGTTTTTTTCTTCTTGTTTT
TCTCTTAGTTTCTGTTTTCAATTTCATTACCTTGTACCCTTTGTCATTTC
CTTTTTTTCTTTGCTTTGGATTTATCTTGCTTCATTAAAATTGAAGCTCA
CTTTATTAATTGGAGACCATTTTTCTTGCTTTTGTTGTGTCCCATGAACT
TTTTTATGCCTTCTTTCTAATTTTTCTTTTAGCTAAAGTTATTTTCTAGC
TTCCTGTCTGACTTCCTGTCCACCTGCGTCTTACTAAAGCAGACTGTTTA
ATTCCCAAGTGCTGAGAGACCTTGTCTCCTTGTCTCCTTTCTAGTTTAGT
ATGGTCCCTGGCTAAGAACATACTTCCCACTGTGACTCTTTCACACTTGT
TATTGTTTGACTTATGACCTGGGACATAGTCTGTCTTGGTGAATATTCCA
TGTGCACTTGAAAGGGATTCGTACTTTCATGTACCTGATGGAATGTCTTA
GAAAAATCAATTAGATCCAGTCGGTGGATGGTGGTGTTGAGTTCTTCTAC
ACATACGCTGAGCTTTCTGTTTAGCTGACCTACTTATAACTGAGGGAGGC
CTGCTGAAGACTTTAACCACAGTTCTGAATTTTTCCATTTTTCGTCACAA

NNTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTAGAGTTTTCATTGACAAGC
TTTGAGCAGTCAGTCTCACATGTCTTTAAAGCTCCAAACTGGAGGATTCT
AAATTTCTACCCCAAATGTCACACCCTTTGTTACACCCTTTCCCTTACAA
TGTGTGAGCCCCACAAACTGTGTGCTTCTTGTCACCAGAGCTTTTGGGAA
AGGTTTCTGTGATTTATGCATTAATAACTGCTGGATCTGAGATATCCTGC
AGATCCTTCATATTTTAAGAGTTTACTCTGCATCTGTATTTTTTAATGTA
TTGTTCTTCATCAGTTCTGTGGTTTTATCCACCACAAACTTTTTATATCA
TTTTGATAAACTAATGAAATCATATAAATAAATATGATTTATAAATAAAT
AAAAATCACATATAGGTAAAAATATAATCATATGCAAGCTCTAATACCAT
AACAATAAACTCTTATAGAAAGAGCTTTCATGATGCCTCAAGTTCCTCAT
TGGTTTGTTGAGAAACTATCTCTATGTGTTCATGTGTGCATGTGTGTATG
GGCATGTACACACATGTGTGTATGTCAAAGATAGAGAAAAATCTCAGTGT
CATTCCTTAGGTGCTATTGGCCTTAAAAAAAAGATTTATTTATTTAATGT
ATATGA

Query= MSMg01no075_o09.g1 MSMg01no075_o09.g1 CHROMAT_FILE:
MSMg01no075_o09.g1 PHD_FILE: MSMg01no075_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:41 2005
         (629 letters)



>mm_chr6_94973761_94974789
          Length = 1029

 Score = 1029 bits (532), Expect = 0.0
 Identities = 541/544 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttagagttttcattgacaagctttgagcagtcagtctcacatgtctttaaagctccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 agttagagttttcattgacaagctttgagcagtcagtctcacatgtctttaaagctccaa 485

                                                                       
Query: 61  actggaggattctaaatttctaccccaaatgtcacaccctttgttacaccctttccctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 actggaggattctaaatttctaccccaaatgtcacaccctttgttacaccctttccctta 425

                                                                       
Query: 121 caatgtgtgagccccacaaactgtgtgcttcttgtcaccagagcttttgggaaaggtttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 caatgtgtgagccccacaaactgtgtgcttcttgtcaccagagcttttgggaaaggtttc 365

                                                                       
Query: 181 tgtgatttatgcattaataactgctggatctgagatatcctgcagatccttcatatttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tgtgatttatgcattaataactgctggatctgagatatcctgcagatccttcatatttta 305

                                                                       
Query: 241 agagtttactctgcatctgtattttttaatgtattgttcttcatcagttctgtggtttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 agagtttactctgcatctgtattttttaatgtattgttcttcatcagttctgtggtttta 245

                                                                       
Query: 301 tccaccacaaactttttatatcattttgataaactaatgaaatcatataaataaatatga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tccaccacaaactttttatatcattttgataaactaatgaaatcatataaataaatatga 185

                                                                       
Query: 361 tttataaataaataaaaatcacatataggtaaaaatataatcatatgcaagctctaatac 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 184 tttataaataaataaaaatcatatataggtaaaaatataatcatatgcaagctctaatac 125

                                                                       
Query: 421 cataacaataaactcttatagaaagagctttcatgatgcctcaagttcctcattggtttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 cataacaataaactcttatagaaagagctttcatgatgcctcaagttcctcattggtttg 65

                                                                       
Query: 481 ttgagaaactatctctatgtgttcatgtgtgcatgtgtgtatgggcatgtacacacatgt 540
           |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 64  ttgagaaactatctctatgtgttcatgtgtgcgtgtgtgtgtgggcatgtacacacatgt 5

               
Query: 541 gtgt 544
           ||||
Sbjct: 4   gtgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)