BAC Information

Click to search

BAC

Clone NameMSMg01-076D07
Chromosome6 (Build37)
Map Location 131,934,205 - 131,934,591
singlet/doubletsinglet
Overlap genenone
Upstream geneEG625648, LOC667830, EG434094, Klra2, LOC434095, 2010012C16Rik, Styk1, Csda, LOC625758, 5430401F13Rik, LOC625781, Tas2r130, Tas2r107, Tas2r106, Tas2r104, Tas2r105, Tas2r114
Downstream geneLOC639802, EG114600, Prb1, LOC631126, LOC100043878, Prpmp5, EG667929, EG381818, Prh1, Prp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076D07.T7 (MSMg01no076_d07.b1)MSMg01-076D07.TJ (MSMg01no076_d07.g1)
ACCAG298838AG298839
length688745
length of high quality
(start - end)
374 (49 - 422)391 (132 - 522)
definitionCHROMAT_FILE: MSMg01no076_d07.b1 PHD_FILE: MSMg01no076_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:06 2005CHROMAT_FILE: MSMg01no076_d07.g1 PHD_FILE: MSMg01no076_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTCACCTCTGAGCCCCATTTTTAAGGGGGTTATTTGAT
TTTCTGGAATCCACCCTCTTGAATTATTTATATATATTGGATATTAGTCC
CCTATCTGATTTAAGATAGATAAAGATCCTTTCCCAATCTGTTGGTGGTC
TTTTTGTCTTATTGACTGTGTCTTTTACCTTGCAGAAGATTTGTAGTTTC
ATGAGGTCCCATTTGTCAATCCTCGATCTTACAGCACAAGCCATTGCTGT
TCTATTCAGGAATTTTTTTCCCTGTGCCCATATCTTCAAGGCTTTTCCCC
ACTTTCTCCTCTATAAGTCTACTTGTCTGTCACTATACCAGTACCATGCA
GTTTTTATCACAATTGCTCTGTAGTAAAGTTTTACGTCTTGCATGGTGAT
TCCACCAGAGGTACTTTTATCCTTGAGAAGATATTTTGCTATCCTAGGTT
CTTTTGTTATTCCAGATGAATTTCCAGACTGCTCTTTTCTATTCGTTGAA
CAATTGAGCTGGAATTTTGATAGGCATTGCATCGAATATGTACATTGCTT
CTTTGTAGATAGCCATTCTTACCTTATTGCCCCTGCTTTTCTTTGATCTT
GTCCTACTTTTCCTTCTCCTTATCTCTCCTTTTCCTCT
NNNNNNNCCCNNNNNCCCCNCCCCCCCTTTNTTACCCCTCTCCCCTTTTT
TTTTCCTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATATTGAATGA
TAGAATCAGTTGATATCAATACAAATTATGTATTATCCAAGAAAAGATCA
AACATGGAAAATATATGTATAACAAACTAACAAACAAACAGCATGAGAGA
AAAACAGCCATCATTCCTTGTACCCTAAGAAGTGTCATGCAAACAGAGTA
CCTTGTGTTCAAAATTAAGCATGAAAATAATGTTGGCTACATAACAATAA
CAATTGCATTAAAGGGCTAATTATAAGAATTGCCCTAGAATCAATGAGAT
ATATCCAGAGAATTAAATTAGTTGAGAATACATAATATCAATAAAATATT
TTCACTGAGAAAATGAGGCATAACAAGAATCATTATTTGAGATTAACTCC
CCTGTATTAAACTTGATCCGAGAACAGCGTATAAGGCAATGTTAAAACAG
TGCATGAATGAAAAACACAAAATACCTTTTTATAAGTTGTATAGACCATT
CTAAACACTTGATTAATTGTGGACAAATAACTCTGGTGACTTTGACTAAT
ACTACTTAATGGAATGAGTAACACTGACACAGTCCGATGTATTATCCTTG
GAGCATGAGGAACTCTATGCATATTCTGACTATATGAAACCCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_d07.g1 MSMg01no076_d07.g1 CHROMAT_FILE:
MSMg01no076_d07.g1 PHD_FILE: MSMg01no076_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:06 2005
         (391 letters)



>mm_chr6_131934005_131934795
          Length = 791

 Score =  687 bits (355), Expect = 0.0
 Identities = 379/387 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcagagaatattgaatgatagaatcagttgatatcaatacaaattatgtattatccaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcagagaatattgaatgatagaatcagttgatatcaatacaaattatgtattatccaag 260

                                                                       
Query: 61  aaaagatcaaacatggaaaatatatgtataacaaactaacaaacaaacagcatgagagaa 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaagatcaaacagggaaaatatatgtataacaaactaacaaacaaacagcatgagagaa 320

                                                                       
Query: 121 aaacagccatcattccttgtaccctaagaagtgtcatgcaaacagagtaccttgtgttca 180
           ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 321 aaacagccatcattccttgtaccctaagaagagtcatgcaaacagaataccttgtgttca 380

                                                                       
Query: 181 aaattaagcatgaaaataatgttggctacataacaataacaattgcattaaagggctaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaattaagcatgaaaataatgttggctacataacaataacaattgcattaaagggctaat 440

                                                                       
Query: 241 tataagaattgccctagaatcaatgagatatatccagagaattaaattagttgagaatac 300
           ||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 tataagaattgtcctagaattaatgagatatatccagagaattaaattaattgagaatac 500

                                                                       
Query: 301 ataatatcaataaaatattttcactgagaaaatgaggcataacaagaatcattatttgag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataatatcaataaaatattttcactgagaaaatgaggcataacaagaatcattatttgag 560

                                      
Query: 361 attaactcccctgtattaaacttgatc 387
           ||||| |||||||||||||| ||||||
Sbjct: 561 attaaatcccctgtattaaatttgatc 587


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space:   298724
Effective search space used:   298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)