XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CACAAATACAACGAAAGAGTGACAAGTAAGAGCATCCCACTCTAGTAACA
TTTCCACTTATTGGAAAGAAATTAATTTAAAGGATGAATAAATCAACTTT
ATGCTGTTAATGAATTATTCATGATTTTCTGAATACATACAAGAAAAGTA
ACCTTATCTAAGGAACTAGAAAGGCTTCAGAGAGGAAATAGTCTTCCTGT
TGAAATTTGAAGACTTAAGTCACAGTAGACTGAGCAAAGAGATGGAAGGC
AGTGAACAGAGAGAGAACAGCAGTAAGAGTACAGTTGTGTAAAGTGTAAA
GTGCATCGTGGCTTCAAAACTCATGCAAAAGGGCAAAATAGATGTGCTAC
TCAGCTAATAGGTAGGTAAGTAGCAAAGCTATTTATTATGACAGAGTCTT
CCATTTGAACACATGAAAGCCTTGCCTCTCTTTCTCAGCTATTGATCCTA
TTTAGCTGAAATTTTGACAACATTGCATTATGTTTAATGTTTATTACTTT
TTCACAGTCTATCACTTTGTATCCATACATTTTAAGTATGTATACTCCTC
CTTATTTCCCCATCATATTTCATTTTGTTTTGTTTTAGATTATCTTGCAG
CAGAATTTCTGGTCCTCTGGCTCTTATAATCTTTTCATTTCTATTCAAGA
TTATTCTGCTGCCTTAGCTGCAGGTCTTGTGTTAC

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGCCCCATTTTTTA
ATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATAT
ATTGGATATTAGTCCCCTATCCGATTTGGGATAGGTAAAGATACTTTCCC
AATCTGTTGGTGGGCAATCGGCAGATTAATCTGGAATAACAAAAAATCGA
GGATAGCAAAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACC
ACGCCGGACCTAAAACTGTACTACAGAGCAATTGTGATCAAAACTGCATG
GTACTGGTATAGTGACAGACAAGTAGACCAATGGAACAGAATTGAAGACC
CAGAGATGAACCCACACACCTATGGTCACTTGATCTTTGACAAGGGAGCT
AAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCA
CAACTGGCGGTTATCATGTAGAAGAATGCGAATTGATCCATTTCTATCTC
CTTGTACTAAGGTCAAATCTAAGTGGATTAAGGAACTCCACATAAAACCA
GAGACACTGAAACTTATAGAGGAGAAAGTAGGGAAAAGCCTCGAAGATAT
GGGTACAGGGGAAAAATTCCTGAATAGAACAGCGATGGCTTGTGCTGTAA
GATTAAGAATCGATAAATGGGACCTCATAAAATTGG

Query= MSMg01no076_e16.b1 MSMg01no076_e16.b1 CHROMAT_FILE:
MSMg01no076_e16.b1 PHD_FILE: MSMg01no076_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:13 2005
         (589 letters)



>mm_chr6_20546268_20547256
          Length = 989

 Score = 1000 bits (517), Expect = 0.0
 Identities = 565/585 (96%), Gaps = 7/585 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacaaatacaacgaaagagtgacaagtaagagcatcccactctagtaacatttc 64
           |||||||||||| |||| ||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 205 gaattccacaaacacaatgaaagagtgacaaataagagcatcccattctagtaacatttc 264

                                                                       
Query: 65  cacttattggaaagaaattaatttaaaggatgaataaatcaactttatgctgttaatgaa 124
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 265 cacttattggaaagaaattaatttaaaggttgaataaatcaactttatgctgttaatgaa 324

                                                                       
Query: 125 ttattcatgattttctgaatacatacaagaaaagtaaccttatctaaggaactagaaagg 184
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttatttatgattttctgaatacatacaagaaaagtaaccttatctaaggaactagaaagg 384

                                                                       
Query: 185 cttcagagaggaaatagtcttcctgttgaaatttgaagacttaagtcacagtagactgag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttcagagaggaaatagtcttcctgttgaaatttgaagacttaagtcacagtagactgag 444

                                                                       
Query: 245 caaagagatggaaggcagtgaacagagagagaacagcagtaagagtacagttgtgtaaag 304
           |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 445 caaagagatggaaggcagtgaacagagagagaacagcagtaatagtacaattgtgtaaag 504

                                                                       
Query: 305 tgtaaagtgcatcgtggcttcaaaactcatgcaaaagggcaaaatagatgtgctactcag 364
           ||       |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 505 tg-------catcgtggcttcaaaactcatgcaaaagggcaaaatagatgttctactcag 557

                                                                       
Query: 365 ctaataggtaggtaagtagcaaagctatttattatgacagagtcttccatttgaacacat 424
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| 
Sbjct: 558 ctaataggtaggtaagtagcaaagctatttattatgacagagtcttctatttgaacacac 617

                                                                       
Query: 425 gaaagccttgcctctctttctcagctattgatcctatttagctgaaattttgacaacatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gaaagccttgcctctctttctcagctattgatcctatttagctgaaattttgacaacatt 677

                                                                       
Query: 485 gcattatgtttaatgtttattactttttcacagtctatcactttgtatccatacatttta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gcattatgtttaatgtttattactttttcacagtctatcactttgtatccatacatttta 737

                                                        
Query: 545 agtatgtatactcctccttatttccccatcatatttcattttgtt 589
           ||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 738 agtatgtatactccttcttacttccccatcatatttcattttgtt 782


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)