Query= MSMg01no076_e24.b1 MSMg01no076_e24.b1 CHROMAT_FILE:
MSMg01no076_e24.b1 PHD_FILE: MSMg01no076_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:14 2005
(604 letters)
>mm_chr6_51580724_51581727
Length = 1004
Score = 692 bits (358), Expect = 0.0
Identities = 438/508 (86%), Gaps = 68/508 (13%)
Strand = Plus / Minus
Query: 5 gaattcattagccattgtcgcttatgtggttatagagcttggacacagaacaatgaataa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaattcattagccattgtcgcttatgtggttatagagcttggacacagaacaatgaataa 381
Query: 65 aataggcaggtccctgcaatagagactgtgttctagtaaatgctgcccgtgcatttgtgc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aataggcaggtccctgcaatagagactgtgttctagtaaatgctgcccgtgcatttgtgc 321
Query: 125 attagccttcttcacttagtgcaccaaagcaggagaaagaagaaacccaaagctgataga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 attagccttcttcacttagtgcaccaaagcaggagaaagaagaaacccaaagctgataga 261
Query: 185 gcgagagctatgtagcattaacatctactatatgtgagaagccctctttcctcctcctct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gcgagagctatgtagcattaacatctactatatgtgagaagccctctttcctcctcctct 201
Query: 245 gtctctgtctcactgtctgtctctgtctctgtctctgtctctgtctgtctgtctgtctgt 304
||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 200 gtctctgtctcactgtctgtctctgtctctg--------tctgtctgtctgtctgtctg- 150
Query: 305 ctctgtctctgtctctgtctctgtctctgtctctgtctctgtctctctctctctctctct 364
||||||||||||||||||||
Sbjct: 149 -------------------------------------tctgtctctctctctctctc--- 130
Query: 365 ctctctctctctctctgttttctcagtgttaccctggctgtaccagaactcactctgtag 424
||||||| |||||||||||||||||||||||||||||||||
Sbjct: 129 -------------------ttctcagagttaccctggctgtaccagaactcactctgtag 89
Query: 425 accaggcaggcttccaactcacatagatccacctgcctctgcctccccagtgctaggatt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 accaggcaggcttccaactcacatagatccacctgcctctgcctccccagtgctaggatt 29
Query: 485 aaaggctcatgccaccatgccacatgcc 512
|| |||||||||||||||||||||||||
Sbjct: 28 aatggctcatgccaccatgccacatgcc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no076_e24.g1 MSMg01no076_e24.g1 CHROMAT_FILE:
MSMg01no076_e24.g1 PHD_FILE: MSMg01no076_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:14 2005
(449 letters)
>mm_chr6_51457491_51458339
Length = 849
Score = 652 bits (337), Expect = 0.0
Identities = 402/449 (89%), Gaps = 42/449 (9%)
Strand = Plus / Plus
Query: 1 ctgcaggaagccgttgtgtgtttctgattggcagggatggtgttaatgaccacgaggtaa 60
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 ctgcaggaagcctttgtgtgtttctgattggcagggatggtgttaatgaccaggaggtaa 260
Query: 61 agccctaggctagaagacctaaggggtttagcagccattttgtgagttagtttttgtttt 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 agccctaggctagaagacctaaggggtttagcagccatcttgtgagttagtttttgtttt 320
Query: 121 gttttcttttattgtaaatgagggtttagtcttgcttttgtgaatcccataaagtgtctg 180
|||||||||| |||| || ||||||
Sbjct: 321 gttttctttt-------------gttt-gt------tttgtg------------------ 342
Query: 181 ggtgggagtggtgaagtgagaaagcagtgcggtcttcttcaaggtcacacaggctctggc 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 343 ----ggagtggtgaagtgagaaagcagtgcggtcttcttcaaggtcatacaggctctggc 398
Query: 241 cctgagcagggttcatggctaacctgaaagccatggtttatttgaaaatattttcacaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 cctgagcagggttcatggctaacctgaaagccatggtttatttgaaaatattttcacaca 458
Query: 301 gaaagaggtgtcacatccattttgggtggtcagctgggagctgacaactgcgctgtgttg 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 459 gaaagaggtgtcacatccattttgggtggtcagctgggagctgacaactgtgctgtgttg 518
Query: 361 tttggtcttggttgctgagagctttcaaccagactcctttctcccctcctcggttccctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tttggtcttggttgctgagagctttcaaccagactcctttctcccctcctcggttccctt 578
Query: 421 aatttcctgtctttttgccctgcctcagg 449
|||||||||||||||||||||||||||||
Sbjct: 579 aatttcctgtctttttgccctgcctcagg 607
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space: 368321
Effective search space used: 368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
