BAC Information

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BAC

Clone NameMSMg01-076H05
Chromosome6 (Build37)
Map Location 57,220,558 - 57,221,073
singlet/doubletsinglet
Overlap genenone
Upstream genePde1c, EG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6
Downstream geneLOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5, Pigy, Lancl2, AW146242, V1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17, EG633683, LOC626649, LOC626659, LOC626672, LOC666893, LOC100041571, V1rc33, LOC626724, V1rc25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076H05.T7 (MSMg01no076_h05.b1)MSMg01-076H05.TJ (MSMg01no076_h05.g1)
ACCAG299025AG299026
length708779
length of high quality
(start - end)
516 (70 - 585)368 (146 - 513)
definitionCHROMAT_FILE: MSMg01no076_h05.b1 PHD_FILE: MSMg01no076_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:25 2005CHROMAT_FILE: MSMg01no076_h05.g1 PHD_FILE: MSMg01no076_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:26 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTTTGTATACCAAGCAGGCCTTGAACTCAGAAATCTGCCTGCCTC
TGCCTCCTGAGTGCTGGGATTAAAGGTGTGCACCACCACAGCCGGCTAAA
ATACAATTTCTTATTAAAATATGCATTAACAAAGAAATTTAGTGTAAATT
TATTTAGGTAATGAATATCACTAACACTGTTATTATTTTTGTGGAATATC
TTTTACTATTGTATATAAAGTTAAGATGGAAAATGAAGGCAGGTGTGTTG
GCACCCACTTATCACACTTGTGATCCCAGCACTTTCTTTCTCCCTTCCTT
TTTTTTTTTGCTTTCACAATAGTTATTTCTGATGAAGTTACAAAATAGAC
ACAAAATACCTATTTTAAAAGTAAAGGTAATTACTTAGAAAAATAAATAA
AGCACTAATGTTTTAAAAATCCAACATAAACTTTTATGTGAGGAATATTT
TAAGTTGTTTCAGAGGGCAACCAAGACTACCTTGTGCACAGTATTTTTGA
TGGAGACCAACACGGAATGCTGTTCTATAATCAGCCCAGAGCACACTGGT
CCATATCCATCCAGACTGGCTTTACAGAATACCTATTTGATACACTCTGA
TGAGGAAAATGGAGTGAATTTCCTCGCAGTTGCTGCTATCACATGTGCTC
CAAAGCCA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTTTATTTCC
CCTTCTCCTCTCCTTTTCCTTCCGATGATAXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACC
TGAGGAATACCGAATGGCAGAGAAGCACTTGAAAAAATGTCAACATCCTT
AATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACAC
CAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGT
GGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCT
TGTACAACCACTCTGGAAATCAGTCTGGAGGTTTTTCAGAAAACTGGACA
TAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAA
GATGCCCCAACAGGTAAGAAGGACACATGCTCCACTATGCTCATAGCAGC
CTTATTTATAATAGCCAGAAGCTGGACAGAACCTAGATGCCCCTCACCAG
AGGAATGGATACAGAACATGTGGCACCTCTACACAATGGAGTACTACTCA
CCTATTATAAAGAATGAATTTATGAAATTCTCACGCAAATGTATGGACCT
GGAGGGCATCATCCTGAGCGAGGCACCCCTTTCACTAAGAATCTTATACC
ATATGTATTCACTGATAAATGGATATTACCCCCCAACTTTAGCAACCCCA
GAAATAAGATAAAATTTGGTAAACCCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_h05.b1 MSMg01no076_h05.b1 CHROMAT_FILE:
MSMg01no076_h05.b1 PHD_FILE: MSMg01no076_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:25 2005
         (516 letters)



>mm_chr6_57220358_57221273
          Length = 916

 Score =  936 bits (484), Expect = 0.0
 Identities = 508/516 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggccttgaactcagaaatctgcctgcctctgcctcctgagtgctgggattaaaggtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggccttgaactcagaaatctgcctgcctctgcctcctgagtgctgggattaaaggtgt 260

                                                                       
Query: 61  gcaccaccacagccggctaaaatacaatttcttattaaaatatgcattaacaaagaaatt 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaccaccacagccagctaaaatacaatttcttattaaaatatgcattaacaaagaaatt 320

                                                                       
Query: 121 tagtgtaaatttatttaggtaatgaatatcactaacactgttattatttttgtggaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 tagtgtaaatttatttaggtaatgaatatcactaacactgttattatttttatggaatat 380

                                                                       
Query: 181 cttttactattgtatataaagttaagatggaaaatgaaggcaggtgtgttggcacccact 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 cttttactattgtatataaagttaagatggaaaatgaaggcaggtgtgttggcacctact 440

                                                                       
Query: 241 tatcacacttgtgatcccagcactttctttctcccttcctttttttttttgctttcacaa 300
           |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |
Sbjct: 441 tatcacacttgtgatcccagcactttctttctccctttttttttttttttgctttcacta 500

                                                                       
Query: 301 tagttatttctgatgaagttacaaaatagacacaaaatacctattttaaaagtaaaggta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagttatttctgatgaagttacaaaatagacacaaaatacctattttaaaagtaaaggta 560

                                                                       
Query: 361 attacttagaaaaataaataaagcactaatgttttaaaaatccaacataaacttttatgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attacttagaaaaataaataaagcactaatgttttaaaaatccaacataaacttttatgt 620

                                                                       
Query: 421 gaggaatattttaagttgtttcagagggcaaccaagactaccttgtgcacagtatttttg 480
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| 
Sbjct: 621 gaggaatattttaagttgtttcagagggtaaccaagactaccttgtgcacagtattttta 680

                                               
Query: 481 atggagaccaacacggaatgctgttctataatcagc 516
           ||||||||||||||||||||||||||||||||||||
Sbjct: 681 atggagaccaacacggaatgctgttctataatcagc 716


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)