BAC Information

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BAC

Clone NameMSMg01-076N19
Chromosome6 (Build37)
Map Location 57,674,326 - 57,755,422
singlet/doubletdoublet
Overlap geneLancl2, AW146242
Upstream gene5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5, Pigy
Downstream geneV1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17, EG633683, LOC626649, LOC626659, LOC626672, LOC666893, LOC100041571, V1rc33, LOC626724, V1rc25, V1rc2, LOC666928, V1rc22, LOC626817, EG626828, LOC666954, Abcg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076N19.T7 (MSMg01no076_n19.b1)MSMg01-076N19.TJ (MSMg01no076_n19.g1)
ACCAG299338AG299339
length690772
length of high quality
(start - end)
465 (45 - 509)228 (127 - 354)
definitionCHROMAT_FILE: MSMg01no076_n19.b1 PHD_FILE: MSMg01no076_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:59 2005CHROMAT_FILE: MSMg01no076_n19.g1 PHD_FILE: MSMg01no076_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,674,326 - 57,674,786)(57,755,195 - 57,755,422)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATAGGTACACTTCTTACATGTTTTTCTCCTTAGGCTTTATTTCCT
GGTTTCTCTCTGTCTGAATTCATTAAATAAAAGCAATTGTTAGATAATGG
CTGCTTCCATTTCTTTTATTTATTAATCTGCATTCTCCCACACACTGTTA
ATTAGAGTAGATGAAGGTGCTTATAACTTGGTCTGATTTCCGATGTCTTC
TTGTCTCTGTAGGTAGTCAGTGCAATTATTGAGTCGGGAAAGAGTCTATC
AAGGGAAGAAAGGAAATCTGAGCGCTGCCCCCTGCTCTATCAGTGGCACA
GAAAACAATATGTTGGAGCAGCCCATGGTATGGTTGGCATCTACTACATG
CTAATGCAGGTATGTGACAATTGTGTGGAATAATGAATATAGTGACCATA
TCACAATATATTAGACCATATGAATGGGGGATTATATTCTTCATAGAGTT
CAAGTAGGCTGAATTAAAGGTTCCTATTTTGACTCACAGATAATTAACTT
GGCTTTACTTCAGTGAATTCAGCAGTAAAAAATGCTGTTTTTAGAATCAT
GCCATCTTTTGCAGACTTGGCTAAATATTGTGACAGAGCTGGCTTGCTCC
CTTTACAGAGGTGCTTAAATGTTGTGCTGACGCTGGGTCG
TTTTTTTTTTTTNNNNNTTTTTTCTCTCTTCNTCTTTCCCTCCAATATCT
TNCCTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATATTCGTGGAGGAGCTGACTGT
AGCAGTAAAAATCAAGGCTCAGCTATACACAGTGTGGGCTCTGAGTGATC
TCAGCCCTCCTACTTAGGCCTCTTCACTCTTAGCCCTGCCATTCCATTTC
CAAGCTAGAAGCCTTAATTCAGGTTTTTCTTAGCATTTGGGTTTGGGCTA
TACAGAGAGATACACAACGTATTTGTATGTTTTCACATTAACTTTTAATT
TTAGAGTAATTCTTACATTTAGAATAGTTGTTAAAACTTTTGCAGAGCTC
CTGTGTAGCTATTATCTAATTTTCTGTCTAGGAATATTTGGCACTGCTAT
AGTATGTTTGCCTGAACAACCATAAAACTCAGTCATGAGTCCAAACCCTC
CCTGCTCTCCTTCAAATTCATGGCTTCATTTTCCACTACTTATTACTGCA
AGCAAACATGTATGCCAATATATATTTATACATCTTCCTACGCATGGCTA
TATTGCAGAATATAAACTGCTCAGCCCATATAATACTTGTATGTTTCTGC
TTCCGTGCCCACCTGTTTGCTACTGACTTAATTGTCCATACTCTTCCCTG
GGTGAACATCATGTCCCCTTGGTCCCATACCTCTGTCCCAGCTACCCTTA
AGTCGGAAGTTTGGAAACCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_n19.b1 MSMg01no076_n19.b1 CHROMAT_FILE:
MSMg01no076_n19.b1 PHD_FILE: MSMg01no076_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:59 2005
         (465 letters)



>mm_chr6_57674122_57674986
          Length = 865

 Score =  837 bits (433), Expect = 0.0
 Identities = 454/461 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccataggtacacttcttacatgtttttctccttaggctttatttcctggtttctc 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccataggtagacttcttacatgtttttctccttaggctttatttcctggtttctc 264

                                                                       
Query: 65  tctgtctgaattcattaaataaaagcaattgttagataatggctgcttccatttctttta 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctgtctgaatttattaaataaaagcaattgttagataatggctgcttccatttctttta 324

                                                                       
Query: 125 tttattaatctgcattctcccacacactgttaattagagtagatgaaggtgcttataact 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 tttattaatctgcattctcccacacactgttaattagagtagatgaaggtgcttgtaact 384

                                                                       
Query: 185 tggtctgatttccgatgtcttcttgtctctgtaggtagtcagtgcaattattgagtcggg 244
           |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 385 tggtctgatttccgatgtctccttgtctctgtaggtagtcagtgctattattgagtcggg 444

                                                                       
Query: 245 aaagagtctatcaagggaagaaaggaaatctgagcgctgccccctgctctatcagtggca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaagagtctatcaagggaagaaaggaaatctgagcgctgccccctgctctatcagtggca 504

                                                                       
Query: 305 cagaaaacaatatgttggagcagcccatggtatggttggcatctactacatgctaatgca 364
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 505 cagaaaacaatatgttggagcagcccatggtatggctggcatctactacatgctaatgca 564

                                                                       
Query: 365 ggtatgtgacaattgtgtggaataatgaatatagtgaccatatcacaatatattagacca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggtatgtgacaattgtgtggaataatgaatatagtgaccatatcacaatatattagacca 624

                                                    
Query: 425 tatgaatgggggattatattcttcatagagttcaagtaggc 465
           |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 625 tatgaatgggggattaaattcttcatagagttcaagtaggc 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no076_n19.g1 MSMg01no076_n19.g1 CHROMAT_FILE:
MSMg01no076_n19.g1 PHD_FILE: MSMg01no076_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:59 2005
         (228 letters)



>mm_chr6_57754995_57755622
          Length = 628

 Score =  418 bits (216), Expect = e-121
 Identities = 225/228 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatattcgtggaggagctgactgtagcagtaaaaatcaaggctcagctatacacagtgtg 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 428 tatattcgtggaggagcggactgtagcagtaaaaatcaaggctcagctatacacagtgta 369

                                                                       
Query: 61  ggctctgagtgatctcagccctcctacttaggcctcttcactcttagccctgccattcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggctctgagtgatctcagccctcctacttaggcctcttcactcttagccctgccattcca 309

                                                                       
Query: 121 tttccaagctagaagccttaattcaggtttttcttagcatttgggtttgggctatacaga 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tttccaagctagaggccttaattcaggtttttcttagcatttgggtttgggctatacaga 249

                                                           
Query: 181 gagatacacaacgtatttgtatgttttcacattaacttttaattttag 228
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gagatacacaacgtatttgtatgttttcacattaacttttaattttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space:   135561
Effective search space used:   135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)