BAC Information

Click to search

BAC

Clone NameMSMg01-078A08
Chromosome6 (Build37)
Map Location 109,611,059 - 109,611,450
singlet/doubletsinglet
Overlap genenone
Upstream geneBhlhb2, Arl8b, Edem1, EG627371, LOC639110, LOC100043720
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078A08.T7 (MSMg01no078_a08.b1)MSMg01-078A08.TJ (MSMg01no078_a08.g1)
ACCAG299455AG299456
length719723
length of high quality
(start - end)
397 (48 - 444)222 (69 - 290)
definitionCHROMAT_FILE: MSMg01no078_a08.b1 PHD_FILE: MSMg01no078_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:13 2005CHROMAT_FILE: MSMg01no078_a08.g1 PHD_FILE: MSMg01no078_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTTCTCCACTCTTCATCTCCAAGTGCCTCTTTCTTCCCCAGT
TACTTCTTCAACCATACACCTACCCCACCCCTTTAATTTCAGTCTCTCAT
TTGCCACAGTCTTTAACCTTGGGAGACATACTCAAACTTAGATCAGTGCT
TTCCACTTGAGACATCATCCCCATACTCTATCCTCCTTGGTAACCTTGAA
TATTCAGGAGTAGCGATTCTGAGGTTAAATACATCACTGTGTGCTTGTTC
TTACTGTTGGAGGAGAGATGGTGTGTGTAAGTGAAAGCAGGCATTTCTAT
CATGACAACTTTAGAAGCAGCATACTGCCCTTGAAGGGTTGATTTGCATC
TAAACCTGCCACTGCATTTATGAGTTCATATTTAAATGTTGCAAGATTTG
CTTCTACTTGGAGAAAAGTAATGTTGATTCTATCCTGTTATTTCCATGCA
AGGCTACAGCAGGTGTTAACCTATTCCTACTGCATCACTGGAAGATGTCC
CCTATTTTCATGACCCGCGTTCTGTAGCTTAAATACATTGCCAATACGAC
CATTTGTCCCCCTTTCCTGATCCTCTACGATTTTCTAATTACTTCCTTGG
GTTTCAACCATCCCTGTCATAATTATTTTACCCTTTATTCCCTTTAGTTT
GACAACTACTTCTACCTTA
GATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCCTTCTGTAGGAGGACCAGCAGTCTTAATTA
ATCTTGACCCCTGAGAGCTTTCAAACACTGGGCCACCAAACAGACAGCAT
TTACCAGCTGATATGAGAGGCCCCTAACACACATACAGTAGAGGACTTCC
AGATCTGTGTTCATTCAGAGATGATGCACCTAACCCTCAAGAGACTGGAG
GCCCAGGGAGTTTAGAGGTTAGGTGGGATGGGGGGTAGAGGCTTTCTTCT
GCANTCGCGCCCCCGTTCGCTGACTCCCTCCTCTTCTTCGCCTTCCCCCC
CTTTTCTCCCCCCCTCTCCCTTTCTCTTTTTTTTCCCCCCCCCTCCCTCT
TCCCCCCTCCCCCCCTCTTTTCTTTTCTTTTTTCCCCCTTTCCTCCCTCC
TCCCTCTTTTTTTTTCTTTTTTTTCTTCCCCCCCCCCCTCCCCCTTTTTC
TCCCCCAAACTACTCACTATTCTCTCTTCCTCCTCCCCTGATCATGTTTA
CTTTTCTTTCCCATTATCTTATCTTTTTTCTATTCCCCTCACCCTTTTCT
CTTCCTCCTTTTTCCTTCTCCCCTCCCCCCCCCTTTTTTCTCTTCTCCAC
TTTTTTTTCCCCCTTACCCATCTTTTTTTTTTTTCCTCTCCTCCTCTTCC
CATCCTCTATTCTATTCTCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_a08.b1 MSMg01no078_a08.b1 CHROMAT_FILE:
MSMg01no078_a08.b1 PHD_FILE: MSMg01no078_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:13 2005
         (397 letters)



>mm_chr6_109610855_109611650
          Length = 796

 Score =  737 bits (381), Expect = 0.0
 Identities = 390/393 (99%), Gaps = 1/393 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcttctccactcttcatctccaagtgcctctttcttccccagttacttcttcaa 64
           ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattctcttctccact-ttcatctccaagttcctctttcttccccagttacttcttcaa 263

                                                                       
Query: 65  ccatacacctaccccacccctttaatttcagtctctcatttgccacagtctttaaccttg 124
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 264 ccatacacctaccccacccctttaatttcaggctctcatttgccacagtctttaaccttg 323

                                                                       
Query: 125 ggagacatactcaaacttagatcagtgctttccacttgagacatcatccccatactctat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggagacatactcaaacttagatcagtgctttccacttgagacatcatccccatactctat 383

                                                                       
Query: 185 cctccttggtaaccttgaatattcaggagtagcgattctgaggttaaatacatcactgtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cctccttggtaaccttgaatattcaggagtagcgattctgaggttaaatacatcactgtg 443

                                                                       
Query: 245 tgcttgttcttactgttggaggagagatggtgtgtgtaagtgaaagcaggcatttctatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgcttgttcttactgttggaggagagatggtgtgtgtaagtgaaagcaggcatttctatc 503

                                                                       
Query: 305 atgacaactttagaagcagcatactgcccttgaagggttgatttgcatctaaacctgcca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atgacaactttagaagcagcatactgcccttgaagggttgatttgcatctaaacctgcca 563

                                            
Query: 365 ctgcatttatgagttcatatttaaatgttgcaa 397
           |||||||||||||||||||||||||||||||||
Sbjct: 564 ctgcatttatgagttcatatttaaatgttgcaa 596


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 796
Length adjustment: 9
Effective length of query: 388
Effective length of database: 787
Effective search space:   305356
Effective search space used:   305356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)