BAC Information

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BAC

Clone NameMSMg01-078K07
Chromosome6 (Build37)
Map Location 44,063,138 - 44,206,905
singlet/doubletdoublet
Overlap genenone
Upstream geneOlfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747, LOC546897, LOC665779
Downstream geneLOC100040210, Cntnap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078K07.T7 (MSMg01no078_k07.b1)MSMg01-078K07.TJ (MSMg01no078_k07.g1)
ACCAG299930AG299931
length706712
length of high quality
(start - end)		550 (45 - 594)540 (77 - 616)
definitionCHROMAT_FILE: MSMg01no078_k07.b1 PHD_FILE: MSMg01no078_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:02 2005CHROMAT_FILE: MSMg01no078_k07.g1 PHD_FILE: MSMg01no078_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,063,138 - 44,063,643)(44,206,366 - 44,206,905)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAACTTTACCCCTCTCTCTCAAGGTGATGTTGATAAGCTACCTTCTG
TAAGAAACTTAATTTGACCCATTAAAGTATATTTTATTGATATAAAATCT
TCCTGAAGTCTTCAGTTCAGTTAATTTTATTTATTTAGACAAAATGTCAA
GTCAAAAGTGATGGGATTCTATCTTCTTACTTTCCATTAACTTTATAGGT
TATATAGTCATACAGTCATGGATATTTAATTAATACGCTACAGTTAGTTT
TGTCTATTTTAAGTACTAGTGTATAATTATGTTGTACCAATTTGCTTTCC
TTGGCATATTATTAAATACATTTCTTAAGTAGTGGTGTTGCCTACTTTTG
AAAAATGAACCTACCTTCCCTAAAGGCCCTGTAAATATCTAATGTATTTG
TTTATGAATGAGAAATAACATCTGAAATTAAAACACTGTTCCTAAAATTT
ATTTGATTTGAACATATGTCAACACTAATAGCATATGCTAAAATAATTGG
TTTTGTGTAATTATTGTTAGATTTCTTTCACAGAAAATCTATAAACACCT
GATATTTATAAAAATATTCATTAAAAAATTCATTTAGGGGCTAGAGAGAT
CACTCAGTGGTTAAGGGCAGTGTCTGCTCTTCCAGAGATTCTGAATTCAA
TTCCCA

NNTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGTGCCCCATTT
TTAATGGGGTTATTTCAACAACTGGTTTTGAGATATTTACAGCACTTGTA
CTTTGGTCCATATAAGTTTAATGTCTTTTTGGACTTAACTTTGACAAAGA
ATTTATCTAAATAGTTCTAGTCCTTGAGATTCATCTAGGATTCTTTAAAT
TTGGTTTCCAAAGTATTTCCTTTAAATTGTTTTTCATTTTCTAGAGAATT
ATGTTAGAACTTTTTCACTGATTGGTCAGGATTTATGGAAAGTTTTATAT
CCTTTATGTCATATGCTAAAGGTTTTCACTGTGTCTAGATTAATAGCCAA
TCTTTCTCAAGCATATATCTTTCTAAAAATAGAGAAGGCATGCAAAGAAG
CATAGTTTAATTTTTATTGACAGGAACTAAGTCATAATATCAAGAACCAA
AATCAATAAATATATGAAATATCAGGATAATTTATTATTCCTAAGCATAG
TGAAACCTTATACTTTATGTCAATCATGTATCAGATGAGAGAAAGGTCTC
CCATGCTCATGGATCAGTAGGATATTACAATATAAGTGGCCATCTTATCA
AAAGCAATCTACACATTCAATGAAATACCCATTGAAATTCCAAAATAATT
CTTCATAAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_k07.b1 MSMg01no078_k07.b1 CHROMAT_FILE:
MSMg01no078_k07.b1 PHD_FILE: MSMg01no078_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:02 2005
         (550 letters)



>mm_chr6_44062894_44063843
          Length = 950

 Score =  978 bits (506), Expect = 0.0
 Identities = 506/506 (100%)
 Strand = Plus / Plus

                                                                       
Query: 45  agctaccttctgtaagaaacttaatttgacccattaaagtatattttattgatataaaat 104
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 agctaccttctgtaagaaacttaatttgacccattaaagtatattttattgatataaaat 304

                                                                       
Query: 105 cttcctgaagtcttcagttcagttaattttatttatttagacaaaatgtcaagtcaaaag 164
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cttcctgaagtcttcagttcagttaattttatttatttagacaaaatgtcaagtcaaaag 364

                                                                       
Query: 165 tgatgggattctatcttcttactttccattaactttataggttatatagtcatacagtca 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tgatgggattctatcttcttactttccattaactttataggttatatagtcatacagtca 424

                                                                       
Query: 225 tggatatttaattaatacgctacagttagttttgtctattttaagtactagtgtataatt 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tggatatttaattaatacgctacagttagttttgtctattttaagtactagtgtataatt 484

                                                                       
Query: 285 atgttgtaccaatttgctttccttggcatattattaaatacatttcttaagtagtggtgt 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 atgttgtaccaatttgctttccttggcatattattaaatacatttcttaagtagtggtgt 544

                                                                       
Query: 345 tgcctacttttgaaaaatgaacctaccttccctaaaggccctgtaaatatctaatgtatt 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tgcctacttttgaaaaatgaacctaccttccctaaaggccctgtaaatatctaatgtatt 604

                                                                       
Query: 405 tgtttatgaatgagaaataacatctgaaattaaaacactgttcctaaaatttatttgatt 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tgtttatgaatgagaaataacatctgaaattaaaacactgttcctaaaatttatttgatt 664

                                                                       
Query: 465 tgaacatatgtcaacactaatagcatatgctaaaataattggttttgtgtaattattgtt 524
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tgaacatatgtcaacactaatagcatatgctaaaataattggttttgtgtaattattgtt 724

                                     
Query: 525 agatttctttcacagaaaatctataa 550
           ||||||||||||||||||||||||||
Sbjct: 725 agatttctttcacagaaaatctataa 750


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no078_k07.g1 MSMg01no078_k07.g1 CHROMAT_FILE:
MSMg01no078_k07.g1 PHD_FILE: MSMg01no078_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:02 2005
         (540 letters)



>mm_chr6_44206165_44207104
          Length = 940

 Score = 1021 bits (528), Expect = 0.0
 Identities = 537/540 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgttcagctctgtgccccatttttaatggggttatttcaacaactggttttgagatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttgttcagctctgtgccccatttttaatggggttatttcaacaactggttttgagatat 682

                                                                       
Query: 61  ttacagcacttgtactttggtccatataagtttaatgtctttttggacttaactttgaca 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 681 ttacagcacttgtactttggtccatacaagtttaatgtctttttggacttaactttgaca 622

                                                                       
Query: 121 aagaatttatctaaatagttctagtccttgagattcatctaggattctttaaatttggtt 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 621 aagaatttatctaaatagttctagtcattgagattcatctaggattctttaaatttggtt 562

                                                                       
Query: 181 tccaaagtatttcctttaaattgtttttcattttctagagaattatgttagaactttttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccaaagtatttcctttaaattgtttttcattttctagagaattatgttagaactttttc 502

                                                                       
Query: 241 actgattggtcaggatttatggaaagttttatatcctttatgtcatatgctaaaggtttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actgattggtcaggatttatggaaagttttatatcctttatgtcatatgctaaaggtttt 442

                                                                       
Query: 301 cactgtgtctagattaatagccaatctttctcaagcatatatctttctaaaaatagagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cactgtgtctagattaatagccaatctttctcaagcatatatctttctaaaaatagagaa 382

                                                                       
Query: 361 ggcatgcaaagaagcatagtttaatttttattgacaggaactaagtcataatatcaagaa 420
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcatgcaaagaagcatagtataatttttattgacaggaactaagtcataatatcaagaa 322

                                                                       
Query: 421 ccaaaatcaataaatatatgaaatatcaggataatttattattcctaagcatagtgaaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaaaatcaataaatatatgaaatatcaggataatttattattcctaagcatagtgaaac 262

                                                                       
Query: 481 cttatactttatgtcaatcatgtatcagatgagagaaaggtctcccatgctcatggatca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttatactttatgtcaatcatgtatcagatgagagaaaggtctcccatgctcatggatca 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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