BAC Information

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BAC

Clone NameMSMg01-078K08
Chromosome6 (Build37)
Map Location 42,220,848 - 42,221,121
singlet/doubletsinglet
Overlap geneCasp2
Upstream geneTry4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139
Downstream geneClcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078K08.T7 (MSMg01no078_k08.b1)MSMg01-078K08.TJ (MSMg01no078_k08.g1)
ACCAG299932AG299933
length727755
length of high quality
(start - end)
277 (43 - 319)127 (66 - 192)
definitionCHROMAT_FILE: MSMg01no078_k08.b1 PHD_FILE: MSMg01no078_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:02 2005CHROMAT_FILE: MSMg01no078_k08.g1 PHD_FILE: MSMg01no078_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGATCCGCGGAATT
CTGCACTGTATTCCCACTGTAGCAAAGTCCTGTATTCACAGCAAACACCT
GGCTTAGGAATGTCCATCTTATCTATACACTGCTCCCTCTGCTTAGACTG
CCTCTGTGAGTTCCACCCACTGCACTTACTCTTCTGACCTCATCTACTCA
AGTTATTTATACTCTCAGCTCTTGTAAGAATAGAAGCTCCAGCTCTATTA
GTAATATAGGGGGATGAACTAATGTTAAAAGCTCCCCCCACATCTATCCT
TGAATTCTGAACCACATTAAATTAAATTTGCGTGTGTGTTTTAACAGTCC
TGAAATTACAAGGTGCTCAAAATTTAGTTTCACTGTAACCCATGTGATAG
TACTACTTGGCACTGAGAATTCAGTAGTCCTTGACTCTGCCTTATTTACA
GTCCAAATGGAAATGGCCTATATAAAGGATTCATCAAGTTTCCTGAACAT
TTCAGAAACCAATCAAAATATAATGTAAACCCAGCACTATTCCCCTCTAT
TATTGATACAGAATGCAATCCCTTTATCACGCATCTTATATTTCCCGTCC
CCACCCCTTCTTTACCCAATCTTTTCTTTATTCTTTTCCTTTATTCATAT
ATTGTAAACACCGACCCTCCCCCTTGGAAACCTAAACCTATCTTCAATGC
TTGGTTATGTGAACCTTCTACGTTCCT
GTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTGATCTCTCGAATACTTTTAATTAGAAACGGTAT
TGTATTTTGTCAAAGGGTTTTTTAGCATCTGATGAGATGATCATGTGCGT
TTTTGTCTTTGAGTTTGTTTTATATAGTGGATGGTAATTATGTATCTCCC
CCACTCCCCCCCCCCCTGCACCCCTGCCCTGACCTCCACCCCATCCTCTC
CCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCTC
TCCTTTCTTTTTCTCCCCTCTTTCTCTCCCCTCCCCTCTTTTACCTCCCC
CCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCTCTCCTTCCTTCCTCCCCC
CCCCCCCTTTTCCCCCCCCCCTCCCCTTCTTTTCTCCCCTCTTTTCCCCC
CCTATCCCTCCTCCCTCACTCCCTTTTCTATCTCCCTCCTCTTCTTCCCC
CCCCCCCTCCCCCCCCTTTCCCTCCCCTTCCCTCTACCTCTTCCCTCCCC
CCCATTCCCCCTTTTCTCTTTCCTTTCCCTTTCCCCCCTATCCTCCCCCT
CCTTTATCCTCCCCTCCCTTTTCCCTCCCCCTTCTCCCCTTCCACACCCT
CCCTCCCCTTTTTCCTCTTCTTCTCCCCTTTTTTTCCCCCCCCCCCCTCC
CATTCCACCTATGCCCCCTCCCACCCCCCCTCCTCCTCCCATCTCTCCCC
CTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_k08.b1 MSMg01no078_k08.b1 CHROMAT_FILE:
MSMg01no078_k08.b1 PHD_FILE: MSMg01no078_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:02 2005
         (277 letters)



>mm_chr6_42220645_42221321
          Length = 677

 Score =  530 bits (274), Expect = e-155
 Identities = 274/274 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattctgcactgtattcccactgtagcaaagtcctgtattcacagcaaacacctggctt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gaattctgcactgtattcccactgtagcaaagtcctgtattcacagcaaacacctggctt 418

                                                                       
Query: 64  aggaatgtccatcttatctatacactgctccctctgcttagactgcctctgtgagttcca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aggaatgtccatcttatctatacactgctccctctgcttagactgcctctgtgagttcca 358

                                                                       
Query: 124 cccactgcacttactcttctgacctcatctactcaagttatttatactctcagctcttgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 cccactgcacttactcttctgacctcatctactcaagttatttatactctcagctcttgt 298

                                                                       
Query: 184 aagaatagaagctccagctctattagtaatatagggggatgaactaatgttaaaagctcc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 aagaatagaagctccagctctattagtaatatagggggatgaactaatgttaaaagctcc 238

                                             
Query: 244 ccccacatctatccttgaattctgaaccacatta 277
           ||||||||||||||||||||||||||||||||||
Sbjct: 237 ccccacatctatccttgaattctgaaccacatta 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)