BAC Information

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BAC

Clone NameMSMg01-078K14
Chromosome6 (Build37)
Map Location 23,654,578 - 23,821,385
singlet/doubletdoublet
Overlap geneCadps2
Upstream geneLOC668022, Ptprz1, Aass, EG668044, EG546894, EG668053, EG384356, Fezf1, Rnf133, Rnf148
Downstream geneTas2r118, LOC100041082, Slc13a1, LOC100041094, Iqub, Ndufa5, Asb15, EG626715, Lmod2, Wasl, 4932701A20Rik, Hyal4, Spam1, Hyal5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078K14.T7 (MSMg01no078_k14.b1)MSMg01-078K14.TJ (MSMg01no078_k14.g1)
ACCAG299944AG299945
length721699
length of high quality
(start - end)
179 (72 - 250)285 (72 - 356)
definitionCHROMAT_FILE: MSMg01no078_k14.b1 PHD_FILE: MSMg01no078_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:03 2005CHROMAT_FILE: MSMg01no078_k14.g1 PHD_FILE: MSMg01no078_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,654,578 - 23,654,754)(23,821,101 - 23,821,385)
sequence
TTTATTTCTATAATTGCGGCGCTAAACGATCACTATCGAAGAGGACCGCG
GAATTCACTAATACCAGAATAATATGCTAAAATCATTATTCCTTTGGAGG
ATGATCACACCCTCTATTCTCATATTTGAATCTCCACCCCACTCTCACCT
AGCAAAAAAGTAAAATTAATTCAGCAACCACAAAGGATCAGAAAACAATC
CATGGAGGGTAATACTCTTTCATCAGTTAGCCAGTCAGTTTATGCATTAG
GGAAAGATAGGGAAGCCTCCTACATCGGTTATTATTTTCCAATTAAAAAC
AACCCCCCTTATTAAGTTATATGGCATTACTAAGGGCCCCTTAATCTCAG
GATCCTCACTCCATCACCCCCGCACTTAGGGACATCTGTAGGGTCATTTC
AAACAGTGAGTGATCACCCCAAATTTATCCTCGTAACAATTTCTGTTTCA
AATTTATAAAAAGGTGGTCTCGCGTTTCCTCTTCCTCCTGCGATTACTAT
TTTTTGTATAACCCCCTATATTTTCTATAAAGGTATTTATAAGGTCCCCC
CATTTCTTCTATGTGTTTTTTTATTTCCCCCCTCCCCCCGTCTTTCCCCG
CCCTTTAATATCTCGTTCCCGCCTATCGTATGCTACGGCTATGTTTTCCG
CCTACACACGCTTGTTCTTATTTTTTGGATCTTATCTCGCTCTTTTTATA
TCCCCCTCATCACCCCCACTN
CATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTGGTATTGAGATTAAGTTGAAGTTTGAT
TATAAAATACGTTGGTAATGTGTCCTAGAAGAACTAATTTTTCAAAAGCA
TTACCTATTTCCACAAAAACCAGAAACTGGAGGTGGTGATGAATATATGG
CAAGTTATTACAGCTCAGTTCTTTGCCATGCTTTATAGCAAAGCAGAACA
TAGATTAATAATAGACCAATAGCTCTAGGGCTTCTCCTAACCACAGTCCC
CAAAGATATCTAATATCTATTCATTGTCACTTACGTCAACAAAGCTGAAA
CACAGACACAGGGTGAAAAGAGTGCATTTACTAATGGGAAGAATTTAGAT
TTCTTGGTGTTATACAAAGTCTTTTATATATTTTTAAAGTGTAAAGCATG
CAATCACAGGAGAGAATGAAAAAGAATGAAGTTTTGTTTTTATTTTGGTT
TTTTAATCAATCTATATTTGAAGGCCTAATCTAATTTACTTTGTAGCTCC
AGCGCATCCATCTATCTCCCCGCCTATGTTACTTGCAGAAAGATCTCTCT
TCCACTTTGCTCCATATTTTTTCCTTGGAACTTTTATTTACACGTGACCC
CTTCTTTTTTCTTCCAAATAATCTCCACCTAATTTTTAAACTGGTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_k14.b1 MSMg01no078_k14.b1 CHROMAT_FILE:
MSMg01no078_k14.b1 PHD_FILE: MSMg01no078_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:03 2005
         (179 letters)



>mm_chr6_23654376_23654954
          Length = 579

 Score =  311 bits (161), Expect = 1e-89
 Identities = 173/177 (97%)
 Strand = Plus / Plus

                                                                       
Query: 3   atgctaaaatcattattcctttggaggatgatcacaccctctattctcatatttgaatct 62
           ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 203 atgctgaaatcattattcctttggaggatgatcacaccctctattctcgtatttgaatct 262

                                                                       
Query: 63  ccaccccactctcacctagcaaaaaagtaaaattaattcagcaaccacaaaggatcagaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ccaccccactctcacctagcaaaaaagtaaaattaattcagcaaccacaaaggatcagaa 322

                                                                    
Query: 123 aacaatccatggagggtaatactctttcatcagttagccagtcagtttatgcattag 179
           ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aacaatccatgcaggggaatactctttcatcagttagccagtcagtttatgcattag 379


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 579
Length adjustment: 8
Effective length of query: 171
Effective length of database: 571
Effective search space:    97641
Effective search space used:    97641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no078_k14.g1 MSMg01no078_k14.g1 CHROMAT_FILE:
MSMg01no078_k14.g1 PHD_FILE: MSMg01no078_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:03 2005
         (285 letters)



>mm_chr6_23820901_23821585
          Length = 685

 Score =  520 bits (269), Expect = e-152
 Identities = 281/285 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggtattgagattaagttgaagtttgattataaaatacgttggtaatgtgtcctagaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 485 ttggtattgagattaagttgaagtttgattataaaatacgttggtaatgtgtcctagaaa 426

                                                                       
Query: 61  aactaatttttcaaaagcattacctatttccacaaaaaccagaaactggaggtggtgatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aactaatttttcaaaagcattacctatttccacaaaaaccagaaactggaggtggtgatg 366

                                                                       
Query: 121 aatatatggcaagttattacagctcagttctttgccatgctttatagcaaagcagaacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aatatatggcaagttattacagctcagttctttgccatgctttatagcaaagcagaacat 306

                                                                       
Query: 181 agattaataatagaccaatagctctagggcttctcctaaccacagtccccaaagatatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agattaataatagaccaatagctctagggcttctcctaaccacagtccccaaagatatct 246

                                                        
Query: 241 aatatctattcattgtcacttacgtcaacaaagctgaaacacaga 285
           ||||| || ||||||||||||| ||||||||||||||||||||||
Sbjct: 245 aatatgtagtcattgtcacttatgtcaacaaagctgaaacacaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)