AGAATTTGCGGCGCTAAACGACTCCTATAGTCCGAGAATCCGCGGAATTC
TCTGAAATCTCCCAGACAGCCTGGCCAACGGAATGCAAGTTTGTTACAAA
ATAGAAATCCCTAAGCTGAGTGATTAAAGATGTAGAAAACGCAAAATCTT
GTGATCCTGAAAGAAGCAAGTCATGATTGAGAATCCCTAAGGCCAAATAC
AGCAGGGCTTCTCATATAAGCTGGGAAAGGTGTTAGTTATTTGAAATGGC
TTTGTGTATACGATTTAGTAACTTTCTAGGAGACACTTAGACCAGCCCAG
TAAGAATTTTTCCTCCTTTGGTTACATAACCTCATTTTGTCCTTTGAAAG
GAGAGTGATTAAGGTTTTATCATAAGCTAAGACAGTCAGGAGTGCTGAAC
TTGCACTAATATCCTCTCCCAGTATATTTCTCCTGAGTCCAATTACTTGC
AGGGTTGTAGAACTATTATTTTATTTAGCAATGCATTGTTTTGAGACTTA
TTTTTAAGGAACCCTGAAAAGATAGATTCTTACTTACCCTCCGTTTTTTT
GCTTTTGTTTTTTTTTTTTTTGATGTCTGCTTCAGAAATGCTTTACGTCA
CTGTGGTGCGCATATCTGACTAACTAACATTTTATATCAGAGGTGCTTCT
TATAAGCCCATAGATTTTATTACCTTGATGAACGAAACAT

ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGTTTANCTCTGANCCCCATTTTTAAT
GGNGTTATTTGATTTTCTGGACTCCACCTTCTTGAGGTCTTTATATATAT
TTGGAGGGCTGCCCCTACCTTTATTTAGAATAGATAAAGAACCGTTCCCA
CTACAATTGAGGAATATATAAAAAAATATAAAAAACATCTCCCCTTACCA
AATTTTTGCAGTTTTTTGGGGTCCCTTTTTCTAAANTCCTTAATCTTTCG
GGAAAACCCCCNCCCCTGGGGNTTTTTTNCTTCCCACACCCTTCTAAAGA
AAAAAGGNNNNNCCCCTTGNTCTCCCACCCACACCCCCCCCTTTAGTTTT
TTTCCTTTTGGAGTTGTTCTGGGGGCGGGGGGGGGGAGGGGGGGGGGGGG
GTGGGGGGGGGAAGTAAAAAAAACNNNNNNNCCCNCCNNNNCNNCCCCCC
CCCCCCNCCCCCCCCCCCCCCCCNCCCCCCCCCNNNNNNCCCCCCCCCCC
CCCCCNCCCCCNNCNCCCCCNNCCCCCCCCCCCCCCCNCCCCCCCCCCCC
CCCCCCCCCCNNCCCCCCCCNNNCCNCCCCCCCCCCCCCCCCCCCNNNCC
CCCCNCCCCCCTTCCNCCCCCCNCCCCCCCNNCCNCCCNNCCCCNNCCCC
NCCCCCCNCCCCCCCNNCCCCCCCCNCCCCCCCCCCCNCCCCCCCCCCNC
CCCCCCCCCCCCNNNCCCCCCCCCCCCCCCCCTTNNCCCCCCCCCTTTTT
TTTTTTTCTTGTG

Query= MSMg01no078_l22.b1 MSMg01no078_l22.b1 CHROMAT_FILE:
MSMg01no078_l22.b1 PHD_FILE: MSMg01no078_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:10 2005
         (536 letters)



>mm_chr6_102436099_102437040
          Length = 942

 Score =  870 bits (450), Expect = 0.0
 Identities = 516/542 (95%), Gaps = 15/542 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctctgaaatctcccagacagcctggccaacggaatgcaagtttgttacaaaatag 63
           |||||||||||||||  | ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 204 gaattctctgaaatcagcaagacagcctggccaatggaatgcaagtttgttacaaaatag 263

                                                                       
Query: 64  aaatccctaagctgagtgattaaagatgtagaaaa---cgcaaaatcttgtgatcctgaa 120
           ||| |||||||||||||||||||||||||||||||   |  ||||||||||||| |||||
Sbjct: 264 aaacccctaagctgagtgattaaagatgtagaaaaaaac--aaaatcttgtgattctgaa 321

                                                                       
Query: 121 agaagcaagtcatgattgagaatccctaaggcca-aatacagcagggcttctcatata-a 178
           |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |
Sbjct: 322 agaagcaagtcatgattgagaatccctaaggccccaatacagcagggcttctcatataca 381

                                                                       
Query: 179 gctgggaaaggtgttagttatttgaaatggctttgtgtatacgatttagtaactttctag 238
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 -ctgggaaaggtgttagttatttgaaatggctttgtgtatacgatttagtaactttctag 440

                                                                       
Query: 239 gagacacttagaccagcccagtaagaatttttcctcctttggttacataacct---catt 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||
Sbjct: 441 gagacacttagaccagcccagtaagaatttttcctcctttggttacataaccttctcatt 500

                                                                       
Query: 296 ttgtcctttgaaaggagagtgattaaggttttatcataagctaagacagtcaggagtgct 355
           |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 501 ttgtcctttgaaaggagagtgattaaggttttatcataagctaagaaagccaggagtgct 560

                                                                       
Query: 356 gaacttgcactaatatcctctcccagtatatttctcctgagtccaattacttgcagggtt 415
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaacttgcactaatattctctcccagtatatttctcctgagtccaattacttgcagggtt 620

                                                                       
Query: 416 gtagaactattattttatttagcaatgcattgttttgagacttatttttaaggaaccctg 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtagaactattattttatttagcaatgcattgttttgagacttatttttaaggaaccctg 680

                                                                       
Query: 476 aaaagatagattcttacttaccctccgtttttttgcttttgtt-ttttttttttttgatg 534
           ||||||||||||||||||||||||||||||||||  | ||||| |||||||||||| |||
Sbjct: 681 aaaagatagattcttacttaccctccgttttttt--tgttgttgtttttttttttt-atg 737

             
Query: 535 tc 536
           ||
Sbjct: 738 tc 739


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 942
Length adjustment: 10
Effective length of query: 526
Effective length of database: 932
Effective search space:   490232
Effective search space used:   490232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)