BAC Information

Click to search

BAC

Clone NameMSMg01-078N11
Chromosome6 (Build37)
Map Location 132,463,381 - 132,463,849
singlet/doubletsinglet
Overlap genenone
Upstream gene5430401F13Rik, LOC625781, Tas2r130, Tas2r107, Tas2r106, Tas2r104, Tas2r105, Tas2r114, LOC639802, EG114600, Prb1, LOC631126, LOC100043878, Prpmp5, EG667929, EG381818
Downstream genePrh1, Prp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618, 5530400C23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078N11.T7 (MSMg01no078_n11.b1)MSMg01-078N11.TJ (MSMg01no078_n11.g1)
ACCAG300077AG300078
length675679
length of high quality
(start - end)
566 (51 - 616)469 (77 - 545)
definitionCHROMAT_FILE: MSMg01no078_n11.b1 PHD_FILE: MSMg01no078_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:17 2005CHROMAT_FILE: MSMg01no078_n11.g1 PHD_FILE: MSMg01no078_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCCTTTTGCGCTTCCTCCTATTGAGAGGGCCATATATCCAG
TCACAAACCCTTAGATGACCCCTTGATAATAAATCCATAAATGCATCACT
GTATATATCTTGGAGGATTTCATGTGGTCATAATTCATATGATTTAAAAC
TGAGTGAGACTGCCAATAACTTTGGAACCTCAGAGGTTGTATTTTACCTT
CTGATATAAGAGATAGACACCAGCAAATACTCTTTTTTATGAGTACCACA
TCGACTCTCCAAATCTTATTTAAAAAAGTGTGTTCTCTCTTCAGTAAACA
GGTCTTCTCTGAAGAATATCTAAAACATATTGCTTTTAGGAAAAAAAAAC
ACACACACACAAAGAAAGAACCATAAACAATCCCTGCTTTGTTTAGTATG
TCTCTGGGTGGAGTTTAGTTGGATATAACTTCACGTTGTAGAAGACAATA
AGGTTTTTCAGTCTGTGACATGGCAATGTATAAAAATGGAAAATATAAAA
AATATGACCAGAATATTTTTTTTACTCAAAATGGAATAGGTCACTTTTTG
TGAATGCTCTATATCCTCAGTGATAGTGTAAGGCCTTGGGAACTTCCCTT
GAGCTGGATCCCACTTTCAGCCTGT
NCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAAGATTGGCAATGATTGCAAGG
AGTATGGGGACAAAGAATAACAGAGGGATAATCCAGACTGTACCTTGCTC
TTGCAAGCAAGGAAGAGAACACACACCCAGAGGTCAGATTCCCATTTGCT
CTCCAGGGATATTCAGGGGACCAATATAACAGCCTCCTCCCAAAATTAGT
CAATGTCATGAGTCTTAACCTGGTCACCATGAATAACCAAACTCAATTAG
GATTTTCAAATCATTAATCTAGAGTTTCTTGATGGTGGAGGGGAGGAAAC
CCATGAAGAAAACTACAAAGGAAACAAATGACTAACAGATATGACACATA
TGATGAAAGAGGCCACAACAATCATTATGTACAAAACAAGGGACTCTCTC
AGATGAAGCTCAGAGACCTTATGCCTGGATGGTGTACCCAGGAAAGAAAG
GGTGTTGAGGAACCATTCCCTGATACCCGTACCTCGGAAAACAGCCCCTA
TGTTGTGTACCAGTATGAATTCCGACCATCAGGGAAAATGTCCAGACTAG
CATAACGAATATAGACAAGACCGCTCTCCCATATTTATCCCAGCACACTC
ATCTAAAGACTTCGAATACCATCTATGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_n11.b1 MSMg01no078_n11.b1 CHROMAT_FILE:
MSMg01no078_n11.b1 PHD_FILE: MSMg01no078_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:17 2005
         (566 letters)



>mm_chr6_132462875_132463849
          Length = 975

 Score =  849 bits (439), Expect = 0.0
 Identities = 458/469 (97%), Gaps = 9/469 (1%)
 Strand = Plus / Minus

                                                                       
Query: 104 tatatcttggaggatttcatgtggtcataattcatatgatttaaaactgagtgagactgc 163
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 tatatcttggaggatttcatgtggtcataattcatatgatttaaaactgagtgagactgc 916

                                                                       
Query: 164 caataactttggaacctcagaggttgtattttaccttctgatataagagatagacaccag 223
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 caataactttggaacctcagaggttgtattttaccttctgatataagagatagacaccag 856

                                                                       
Query: 224 caaatactcttttttatgagtaccacatcgactctccaaatcttatttaaaaaagtgtgt 283
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 855 caaatactcttttttatgagtaccacatcgactctccaaatcttattttaaaaagtgtgt 796

                                                                       
Query: 284 tctctcttcagtaaacaggtcttctctgaagaatatctaaaacatattgcttttaggaaa 343
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 tctctcttcagtaaacaggtcttctctgaagaatatctaaaacatattgcttttaggaaa 736

                                                                       
Query: 344 aaaaaa--------cacacacacacaaagaaagaaccataaacaatccctgctttgttta 395
           ||||||        ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 735 aaaaaaaaaacacacacacacacacaaagaaagaaacataaacaatccctgctttgttta 676

                                                                       
Query: 396 gtatgtctctgggtggagtttagttggatataacttcacgttgtagaagacaataaggtt 455
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gtatgtctctgggtggagtttagttggatataacttcacgttgtagaagacaataaggtt 616

                                                                       
Query: 456 tttcagtctgtgacatggcaatgtataaaaatggaaaatataaaaaa-tatgaccagaat 514
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 615 tttcagtctgtgacatggcaatgtataaaaatggaaaatataaaaaaatatgaccagaat 556

                                                            
Query: 515 attttttttactcaaaatggaataggtcactttttgtgaatgctctata 563
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 attttttttactcaaaatggaataggtcactttttgtgaatgctctata 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 975
Length adjustment: 10
Effective length of query: 556
Effective length of database: 965
Effective search space:   536540
Effective search space used:   536540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)