BAC Information

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BAC

Clone NameMSMg01-079A05
Chromosome6 (Build37)
Map Location 131,367,795 - 131,368,439
singlet/doubletsinglet
Overlap genenone
Upstream geneEG625473, LOC640779, LOC667793, EG667798, EG625558, LOC625566, EG636947, LOC625628, EG625648, LOC667830, EG434094, Klra2, LOC434095, 2010012C16Rik, Styk1, Csda
Downstream geneLOC625758, 5430401F13Rik, LOC625781, Tas2r130, Tas2r107, Tas2r106, Tas2r104, Tas2r105, Tas2r114, LOC639802, EG114600, Prb1, LOC631126, LOC100043878, Prpmp5, EG667929
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079A05.T7 (MSMg01no079_a05.b1)MSMg01-079A05.TJ (MSMg01no079_a05.g1)
ACCAG300208AG300209
length700703
length of high quality
(start - end)
648 (46 - 693)629 (75 - 703)
definitionCHROMAT_FILE: MSMg01no079_a05.b1 PHD_FILE: MSMg01no079_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:31 2005CHROMAT_FILE: MSMg01no079_a05.g1 PHD_FILE: MSMg01no079_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAGAGGCGCAAGTTTTGAAATAGCTAGGCACATCCACAGTCAAA
AACGGAGAAAACAAATACATCCATACCTCCAGCTCAGCTCCCTTTCTCTG
CTTCTATTCAGTCCAGGAACCAACCCTAGAGAGTGCTGCAACTAACTTTT
AGACTTGGTCTTCCCACATCAATTAATATAACCATGACATTTCCCTAAGG
ATTGACCACACGGGCACACCTGATCTAGATTATCCTTCACTTTCCCAACC
AGCTGACTCTAGGCTGTGCCCAGGTAACAGTTAAAATAAGCCATTACAGC
ATGTTTAAAAAATTATAATAACTTCAGGTGCTTTTCTGATATTTTATTTC
AACCTTCTATATCAAAGAAGCGTTTTTATCTTTGTATACTTTAAAACACC
TCATACTTACTTTAAATGCTATTTTTTTCTCTTTTAACTCAGTTTGGATG
AAATTCTGTTGTTTCTCTTTTAAGATAAGAGCCAGTATGGGGTGGCACCA
TTATTTCATGGTGCCAAGGGTTGAACCCAGAGACAAATACCTGTTAGGTA
AGTGTTCTGTTGTGAAGCCACACTCCCAGCTCCTCATGGGTGGTTTAAGC
TACAAGGGACAGATCTGAGTGACCCTGATATAAAACCCAAAGTGGGCATT

CCTGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCAGA
GAAGCACCTGAAAAAATGTTCATCAACCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACATCAGTCAGAATGGCTAAGATC
AAAAATTTTGGTGACAGCAGATGCTGGTGTGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGATGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGAGGTTCCTCAGGAAATTGGACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGCAACACATTCACAAAGGAACTCACACAATATGTACTCACTGTTAAGT
GGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCT
AAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_a05.b1 MSMg01no079_a05.b1 CHROMAT_FILE:
MSMg01no079_a05.b1 PHD_FILE: MSMg01no079_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:31 2005
         (648 letters)



>mm_chr6_131367592_131368639
          Length = 1048

 Score = 1139 bits (589), Expect = 0.0
 Identities = 631/645 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacagaggcgcaagttttgaaatagctaggcacatccacagtcaaaaacggaga 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacagaggtgcaagttttgaaatagctaggcacatccacagtcaaaaacggaga 263

                                                                       
Query: 64  aaacaaatacatccatacctccagctcagctccctttctctgcttctattcagtccagga 123
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 264 aaacaaatacatccatacctccagctcaactccctttctctgcttctattcagtccagga 323

                                                                       
Query: 124 accaaccctagagagtgctgcaactaacttttagacttggtcttcccacatcaattaata 183
           |||||||||| |||||| || ||||||||||||||||||||||||||||||||||||| |
Sbjct: 324 accaaccctacagagtggtgtaactaacttttagacttggtcttcccacatcaattaaca 383

                                                                       
Query: 184 taaccatgacatttccctaaggattgaccacacgggcacacctgatctagattatccttc 243
           || |||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 384 tatccatgacaattccctaaggattgaccacacaggcacacctgttctagattatccttc 443

                                                                       
Query: 244 actttcccaaccagctgactctaggctgtgcccaggtaacagttaaaataagccattaca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 actttcccaaccagctgactctaggctgtgcccaggtaacagttaaaataagccattaca 503

                                                                       
Query: 304 gcatgtttaaaaaattataataacttcaggtgcttttctgatattttatttcaaccttct 363
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gcatgtataaaaaattataataacttcaggtgcttttctgatattttatttcaaccttct 563

                                                                       
Query: 364 atatcaaagaagcgtttttatctttgtatactttaaaacacctcatacttactttaaatg 423
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtatcaaagaagcgtttttatctttgtatactttaaaacacctcatacttactttaaatg 623

                                                                       
Query: 424 ctatttttttctcttttaactcagtttggatgaaattctgttgtttctcttttaagataa 483
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ccatttttttctcttttaactcagtttggatgaaattctgttgtttctcttttaagataa 683

                                                                       
Query: 484 gagccagtatggggtggcaccattatttcatggtgccaagggttgaacccagagacaaat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gagccagtatggggtggcaccattatttcatggtgccaagggttgaacccagagacaaat 743

                                                                       
Query: 544 acctgttaggtaagtgttctgttgtgaagccacactcccagctcctcatgggtggtttaa 603
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 744 acctgttaggtaagtgttctgttgtggagccacactcccagctcctcatgggtggtttaa 803

                                                        
Query: 604 gctacaagggacagatctgagtgaccctgatataaaacccaaagt 648
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gctacaagggacagatctgagtgaccctgatataaaacccaaagt 848


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)