BAC Information

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BAC

Clone NameMSMg01-079C15
Chromosome6 (Build37)
Map Location 85,215,882 - 85,356,171
singlet/doubletdoublet
Overlap geneSfxn5, Rab11fip5
Upstream gene4930504D19Rik, Cyp26b1, Exoc6b, LOC665129, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1
Downstream geneNoto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4, Alms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079C15.T7 (MSMg01no079_c15.b1)MSMg01-079C15.TJ (MSMg01no079_c15.g1)
ACCAG300312AG300313
length689684
length of high quality
(start - end)
337 (66 - 402)535 (58 - 592)
definitionCHROMAT_FILE: MSMg01no079_c15.b1 PHD_FILE: MSMg01no079_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:43 2005CHROMAT_FILE: MSMg01no079_c15.g1 PHD_FILE: MSMg01no079_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,355,855 - 85,356,171)(85,215,882 - 85,216,412)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTTTGTCGATCAGACAGGCCTTGAACTCACAGAGATCTGCCTGTCT
CTGCTGGGATTAAAGGCTTGTGCCACCATGTTCAGCTCCTTACCTCCTCT
TGAAGACTTTAGCTGGTCAAGGTCCAAAATGCCTTATTTCTGATGGAAAA
GGAGATCTGGGTCCAGAGTCTCTGTAGAGGTAGAACAGGAGCTGAAGACA
GGGCCCTGCCTCCCAGAAGCACCTCTGTCTGCCCTTGGGCCGCCGCAGTC
AGTGGTCATGTGGTATGAGTTCAGGGAGATGCAATTTCTGGGTCTCACGA
TCCTCTCATGGCCACTAGCTCCAAGGAGTGGAGCAGCATACAGATGAGCG
GGTCAGAGCGACCGTGTGGTGTCTCCTGAATGCATTAGGGTTGTTTGTGT
CTTCGGCTGGCGGTGTGTATGGATTCTGTTAGGTGAGTGTAGGCTTCTAA
GAGTACTGCCTTTGGGACACAGATCTGGGGACTTTGGTGCGCATGTAGTA
TGTCCTGAATTGTCTAATTTTGTCATGTTTGTCATGTTTGTGGAAGGTGA
GGGGAACTCATGTCTGAGCACCTTGCATATATTGTGTATTGTCTAGGAAT
ATACTCATGTTTCTAGATAGGCTAAAGTTTACATGAGGA
ATGAAGTGTTAGGCTGGCGGCGCCTTTCAAACACTTTAGGTGACCTATAG
ATTCACCCGCGGAATTCCTGAGCCACATGCTCAGTGGGAAGGTACCAGGG
CGAGGACCTTTCCACTCAAGCCCTTCCCTGTGCTGCGCCCTCCTCCCAGG
TCCTTCTGCTTCATCAGAGCATCTCTAGGAAGGGAAAGGCTGTTGATGCA
CCTGAGCCAGGGAGGCTCTAAACTCCTCTTGCATTACAGAGCAAAAGGGT
GGGGAGGGAGCCCTCTCCCCTCCCGGGAGCTCAGGCCTCAGCCCAGCAGA
GCCAAGCTGCCCCGATTTATCTGACTCTCAAACCAAGTTCCATTGGGGGT
TGCAAGTCTACCGGACAGATTGGCAGTTTCTCCACAGTGAGCCGTCTACA
CAGGCCTGGCTGCATATGGCTTCTAACTGGCAGCAAGGCATTCAGGGAAC
GAATAAGATACCAGGCACAAAAAGGGATGCCCCACTTTCACTTGGAGGTG
GCTTGGTCTACGTGGGAGTAAAATAAAAGGAGCTGTGTGAGGACAGCCCC
AAAGCTCTGCTTTAGAACCACAGCCATGGCAATGACTGGGTAGGATGAAT
GGCTTCCTATCACACAGTGTGTACAGTTGCATTTAGTGATGTACAAGATA
AGGGAAGGGGTGTAATCAAAAGATTTGTACATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_c15.b1 MSMg01no079_c15.b1 CHROMAT_FILE:
MSMg01no079_c15.b1 PHD_FILE: MSMg01no079_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:43 2005
         (337 letters)



>mm_chr6_85355583_85356319
          Length = 737

 Score =  598 bits (309), Expect = e-175
 Identities = 315/317 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agacaggccttgaactcacagagatctgcctgtctctgctgggattaaaggcttgtgcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 agacaggccttgaactcacagagatctgcctgtctctgctgggattaaaggcttgtgcca 530

                                                                       
Query: 61  ccatgttcagctccttacctcctcttgaagactttagctggtcaaggtccaaaatgcctt 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ccatgttcagccccttacctcctcttgaagactttagctggtcaaggtccaaaatgcctt 470

                                                                       
Query: 121 atttctgatggaaaaggagatctgggtccagagtctctgtagaggtagaacaggagctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 atttctgatggaaaaggagatctgggtccagagtctctgtagaggtagaacaggagctga 410

                                                                       
Query: 181 agacagggccctgcctcccagaagcacctctgtctgcccttgggccgccgcagtcagtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 agacagggccctgcctcccagaagcacctctgtctgcccttgggccgccgcagtcagtgg 350

                                                                       
Query: 241 tcatgtggtatgagttcagggagatgcaatttctgggtctcacgatcctctcatggccac 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tcatgtgggatgagttcagggagatgcaatttctgggtctcacgatcctctcatggccac 290

                            
Query: 301 tagctccaaggagtgga 317
           |||||||||||||||||
Sbjct: 289 tagctccaaggagtgga 273


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no079_c15.g1 MSMg01no079_c15.g1 CHROMAT_FILE:
MSMg01no079_c15.g1 PHD_FILE: MSMg01no079_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:43 2005
         (535 letters)



>mm_chr6_85215678_85216612
          Length = 935

 Score =  996 bits (515), Expect = 0.0
 Identities = 527/531 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgagccacatgctcagtgggaaggtaccagggcgaggacctttccactcaagc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgagccacatgctcagtgggaaggtaccagggcgaggacctttccactcaagc 264

                                                                       
Query: 65  ccttccctgtgctgcgccctcctcccaggtccttctgcttcatcagagcatctctaggaa 124
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccttccctgtgttgcgccctcctcccaggtccttctgcttcatcagagcatctctaggaa 324

                                                                       
Query: 125 gggaaaggctgttgatgcacctgagccagggaggctctaaactcctcttgcattacagag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gggaaaggctgttgatgcacctgagccagggaggctctaaactcctcttgcattacagag 384

                                                                       
Query: 185 caaaagggtggggagggagccctctcccctcccgggagctcaggcctcagcccagcagag 244
           ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 caagagggtggggagggagccctctcccctcccgggagctcaggcctcagaccagcagag 444

                                                                       
Query: 245 ccaagctgccccgatttatctgactctcaaaccaagttccattgggggttgcaagtctac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccaagctgccccgatttatctgactctcaaaccaagttccattgggggttgcaagtctac 504

                                                                       
Query: 305 cggacagattggcagtttctccacagtgagccgtctacacaggcctggctgcatatggct 364
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 505 cggacagattggcagtttctccacagtgagccgtctacacaggtctggctgcatatggct 564

                                                                       
Query: 365 tctaactggcagcaaggcattcagggaacgaataagataccaggcacaaaaagggatgcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctaactggcagcaaggcattcagggaacgaataagataccaggcacaaaaagggatgcc 624

                                                                       
Query: 425 ccactttcacttggaggtggcttggtctacgtgggagtaaaataaaaggagctgtgtgag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccactttcacttggaggtggcttggtctacgtgggagtaaaataaaaggagctgtgtgag 684

                                                              
Query: 485 gacagccccaaagctctgctttagaaccacagccatggcaatgactgggta 535
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gacagccccaaagctctgctttagaaccacagccatggcaatgactgggta 735


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)