BAC Information

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BAC

Clone NameMSMg01-079E01
Chromosome6 (Build37)
Map Location 57,674,326 - 57,755,422
singlet/doubletdoublet
Overlap geneLancl2, AW146242
Upstream gene5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5, Pigy
Downstream geneV1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17, EG633683, LOC626649, LOC626659, LOC626672, LOC666893, LOC100041571, V1rc33, LOC626724, V1rc25, V1rc2, LOC666928, V1rc22, LOC626817, EG626828, LOC666954, Abcg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079E01.T7 (MSMg01no079_e01.b1)MSMg01-079E01.TJ (MSMg01no079_e01.g1)
ACCAG300375AG300376
length701698
length of high quality
(start - end)		637 (45 - 681)570 (70 - 639)
definitionCHROMAT_FILE: MSMg01no079_e01.b1 PHD_FILE: MSMg01no079_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:50 2005CHROMAT_FILE: MSMg01no079_e01.g1 PHD_FILE: MSMg01no079_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,674,326 - 57,674,847)(57,754,854 - 57,755,422)
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATAGGTACACTTCTTACATGTTTTTCTCCTTAGGCTTTATTTCCT
GGTTTCTCTCTGTCTGAATTTATTAAATAAAAGCAATTGTTAGATAATGG
CTGCTTCCATTTCTTTTATTTATTAATCTGCATTCTCCCACACACTGTTA
ATTAGAGTAGATGAAGGTGCTTATAACTTGGTCTGATTTCCGATGTCTTC
TTGTCTCTGTAGGTAGTCAGTGCAATTATTGAGTCGGGAAAGAGTCTATC
AAGGGAAGAAAGGAAATCTGAGCGCTGCCCCCTGCTCTATCAGTGGCACA
GAAAACAATATGTTGGAGCAGCCCATGGTATGGCTGGCATCTACTACATG
CTAATGCAGGTATGTGACAATTGTGTGGAATAATGAATATAGTGACCATA
TCACAATATATTAGACCATATGAATGGGGGATTAAATTCTTCATAGAGTT
CAAGTAGGCTGAATTAAAGGTTCCTATTTTGACTCACAGATAATTAACTT
GGCTTTACTTCAGTGAATTCAGCAGTAAAAAATGCTGTTTTTAGAAGCAT
GCCAGCTTTTGCAGACATGGCTAAGTAGTGTGACAGAGCTGGCTTGCTCC
CTTTACAGAGGTGGCTAAATGGTGTGCTGAGGCTNGGGTGAGAACTCTGT
G

ATGCAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTATATTCGTGGAGGAGCTGACTGTAGCAGTA
AAAATCAAGGCTCAGCTATACACAGTGTGGGCTCTGAGTGATCTCAGCCC
TCCTACTTAGGCCTCTTCACTCTTAGCCCTGCCATTCCATTTCCAAGCTA
GAAGCCTTAATTCAGGTTTTTCTTAGCATTTGGGTTTGGGCTATACAGAG
AGATACACAACGTATTTGTATGTTTTCACATTAACTTTTAATTTTAGAGT
AATTTTTAGATTTAGAAAAGTTGTTAAAACTTTTGCAGAGTTCCTGTGTA
GCTATTATCTAATTTTCTGTCTAGGAATATTTGGCACTGCTATAGTATGT
TTGCCTGAACAACAATAAAACTCAGTCATGAGTCCAAACCCTCCCTGCTC
TCCTTCAAATTCATGGCTTCATTTTCCACTAATTATTATTGCAAGCAAAT
ATGTATGCAAATATATATTTATACATATTCCTACGTAGGGGTATATTGCA
GAATATAAACTGTTCAGTCCATATAATACTTGTATGGCAAGTTTCAGTGC
AGACTGTTTGGCACTGAGCAACTGCCATACTCTTCCCTGGGGAAGACCAT
GTCTCTGGCTCCCAGCTCTGCTCAGTTACCTTAGTTCGTAGGGTTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_e01.b1 MSMg01no079_e01.b1 CHROMAT_FILE:
MSMg01no079_e01.b1 PHD_FILE: MSMg01no079_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:50 2005
         (637 letters)



>mm_chr6_57674122_57675158
          Length = 1037

 Score =  971 bits (502), Expect = 0.0
 Identities = 517/522 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccataggtacacttcttacatgtttttctccttaggctttatttcctggtttctc 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccataggtagacttcttacatgtttttctccttaggctttatttcctggtttctc 264

                                                                       
Query: 65  tctgtctgaatttattaaataaaagcaattgttagataatggctgcttccatttctttta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctgtctgaatttattaaataaaagcaattgttagataatggctgcttccatttctttta 324

                                                                       
Query: 125 tttattaatctgcattctcccacacactgttaattagagtagatgaaggtgcttataact 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 tttattaatctgcattctcccacacactgttaattagagtagatgaaggtgcttgtaact 384

                                                                       
Query: 185 tggtctgatttccgatgtcttcttgtctctgtaggtagtcagtgcaattattgagtcggg 244
           |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 385 tggtctgatttccgatgtctccttgtctctgtaggtagtcagtgctattattgagtcggg 444

                                                                       
Query: 245 aaagagtctatcaagggaagaaaggaaatctgagcgctgccccctgctctatcagtggca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaagagtctatcaagggaagaaaggaaatctgagcgctgccccctgctctatcagtggca 504

                                                                       
Query: 305 cagaaaacaatatgttggagcagcccatggtatggctggcatctactacatgctaatgca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cagaaaacaatatgttggagcagcccatggtatggctggcatctactacatgctaatgca 564

                                                                       
Query: 365 ggtatgtgacaattgtgtggaataatgaatatagtgaccatatcacaatatattagacca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggtatgtgacaattgtgtggaataatgaatatagtgaccatatcacaatatattagacca 624

                                                                       
Query: 425 tatgaatgggggattaaattcttcatagagttcaagtaggctgaattaaaggttcctatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tatgaatgggggattaaattcttcatagagttcaagtaggctgaattaaaggttcctatt 684

                                                     
Query: 485 ttgactcacagataattaacttggctttacttcagtgaattc 526
           |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 685 ttgactcacagataattaacttagctttacttcagtgaattc 726


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no079_e01.g1 MSMg01no079_e01.g1 CHROMAT_FILE:
MSMg01no079_e01.g1 PHD_FILE: MSMg01no079_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:50 2005
         (570 letters)



>mm_chr6_57754854_57755823
          Length = 970

 Score = 1069 bits (553), Expect = 0.0
 Identities = 565/569 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatattcgtggaggagctgactgtagcagtaaaaatcaaggctcagctatacacagtgtg 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 569 tatattcgtggaggagcggactgtagcagtaaaaatcaaggctcagctatacacagtgta 510

                                                                       
Query: 61  ggctctgagtgatctcagccctcctacttaggcctcttcactcttagccctgccattcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ggctctgagtgatctcagccctcctacttaggcctcttcactcttagccctgccattcca 450

                                                                       
Query: 121 tttccaagctagaagccttaattcaggtttttcttagcatttgggtttgggctatacaga 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tttccaagctagaggccttaattcaggtttttcttagcatttgggtttgggctatacaga 390

                                                                       
Query: 181 gagatacacaacgtatttgtatgttttcacattaacttttaattttagagtaatttttag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gagatacacaacgtatttgtatgttttcacattaacttttaattttagagtaatttttag 330

                                                                       
Query: 241 atttagaaaagttgttaaaacttttgcagagttcctgtgtagctattatctaattttctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 atttagaaaagttgttaaaacttttgcagagttcctgtgtagctattatctaattttctg 270

                                                                       
Query: 301 tctaggaatatttggcactgctatagtatgtttgcctgaacaacaataaaactcagtcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tctaggaatatttggcactgctatagtatgtttgcctgaacaacaataaaactcagtcat 210

                                                                       
Query: 361 gagtccaaaccctccctgctctccttcaaattcatggcttcattttccactaattattat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gagtccaaaccctccctgctctccttcaaattcatggcttcattttccactaattattat 150

                                                                       
Query: 421 tgcaagcaaatatgtatgcaaatatatatttatacatattcctacgtaggggtatattgc 480
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 149 tgcaagcaaatatgtatgcaaatatatatttatacatattcctacataggggtatattgc 90

                                                                       
Query: 481 agaatataaactgttcagtccatataatacttgtatggcaagtttcagtgcagactgttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  agaatataaactgttcagtccatataatacttgtatggcaagtttcagtgcagactgttt 30

                                        
Query: 541 ggcactgagcaactgccatactcttccct 569
           |||||||||||||||||||||||||||||
Sbjct: 29  ggcactgagcaactgccatactcttccct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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