BAC Information

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BAC

Clone NameMSMg01-079H23
Chromosome6 (Build37)
Map Location 93,370,095 - 93,370,398
singlet/doubletsinglet
Overlap genenone
Upstream genePrickle2, LOC545866, A730049H05Rik, LOC384461, LOC100043253
Downstream geneLOC665831, Magi1, LOC100043262, LOC665856
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079H23.T7 (MSMg01no079_h23.b1)MSMg01-079H23.TJ (MSMg01no079_h23.g1)
ACCAG300563AG300564
length724748
length of high quality
(start - end)
547 (37 - 583)305 (66 - 370)
definitionCHROMAT_FILE: MSMg01no079_h23.b1 PHD_FILE: MSMg01no079_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:08 2005CHROMAT_FILE: MSMg01no079_h23.g1 PHD_FILE: MSMg01no079_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTG
AGTACCTGTCGTTCTTGGCGTAGTGTTGAGGACTCCCGAGCTATCCCTCC
CACCTCCACCTTCATACACGATAACATGTTTAGTAGTTGTTGTCCGTGTT
TAGCTCCTGTTAGGCAGTCGTGTTAATGAGACTTGATGGGTGTAGCTTCT
GACATTCCCGGGAGACACGAACTCACAGCAGACTTGCTATTCTTCTGGTT
CTTAACCACTCTTTCTAACCACTCTTTCTCTTTCACAGTGATCCCTGAGC
CTTAGGTGCAGGAATTGCTTTGTTGGTGGATCCACTGGGATTGGGCTTCA
TAACTTCAAATTTTTATTGATTGTTGTTTTCTGTAATGGTTTCTATCTGT
TTCAAAAAGAAGCTTCCTTGATGGAGGGTGGCGACTACACTGATCTGTGT
TTATAAGGACAAAAATCAACTCTGTCCAAGAGACTCCCAAAACATTACAG
ACTTACTATTGCCCTTGATCTTGCTTGGTCCCTAAAGGTAGAAGGTAAGT
CCCTGTCTTAGTTACTTTCCTAGTGCTATGGCAAAACACCATAAAAGAAA
GCATTCAGTTTGGGGCTCAGAGATCCAAAGCTTAGAGCCCATGGCCATCG
TGGTAGGGAGGCATGGCAACAGGCAGACAGGCGTGGGGCTGTAACAGTTA
CTGAGAGTTTACTTATTTTCCCCA
GTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAACTGGAGCTGCATTTTGTTCTCTGCATGCTTAAC
TTTGTGGATTTCTGCGATGGTCTCCATCTGCTGCGAAAAGAAGCTTTTAA
ATGAGGACCGAAAGCTACAGTTACTAGTGGGTGGTAGGGTGTGGGATGGT
GGAAAGAGAATCAGAGACGAAAGAGCCCAAATTCCATTGAACTCAGAAGA
AGAATATGTGGGGATGAGGCTCTACTGAGAATGTATTTGGGGTCAGCCCT
GGAAAGCGACACTATATTGGGATACACATCAACGTGTCCATGTCACTACA
AAAGTAAGAAGTGTGTGTGCGAGTGCGTGTGAGTGTGTGTGAGCGTGCGT
GCTCCCTTTTCCCCCCCCTTGTCCATCCCTCTCTTTTTTACCTTTTCCTA
CCTATCTCGTTCCCTTTCCCGTTCCTCCTTCTTCTTGCCTCTTCTTCTAT
TTTATTTACCCTCTCATTTCCCTCCTACCTTCTATTGCCCACTCTTCCCC
TTCAGCTCTTTATCTCCCATTCTCCTCTTCCCTCTGCTTCACCACTCTCG
GATTCTCCTCGCCTGCCCCTATATTCTCCCTCTCTCCTCTAACGTTTCTC
TTCCGTATTTCCTTTCCTTTTCTTCCTCTCACCTCATTCTCCGTACCCTT
TCTTTCTCTACTCCTTCTTCCTCTCTTTTCTCCTTTTTCTTTTCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_h23.g1 MSMg01no079_h23.g1 CHROMAT_FILE:
MSMg01no079_h23.g1 PHD_FILE: MSMg01no079_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:08 2005
         (305 letters)



>mm_chr6_93369777_93370481
          Length = 705

 Score =  542 bits (280), Expect = e-158
 Identities = 298/304 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactggagctgcattttgttctctgcatgcttaactttgtggatttctgcgatggtctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aactggagctgcattttgttctctgcatgcttaactttgtggatttctgcgatggtctcc 563

                                                                       
Query: 61  atctgctgcgaaaagaagcttttaaatgaggaccgaaagctacagttactagtgggtggt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 562 atctgctgcgaaaagaagcttttaaatgaggaccgaaagctacagttacttgtgggttgt 503

                                                                       
Query: 121 agggtgtgggatggtggaaagagaatcagagacgaaagagcccaaattccattgaactca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 502 agggtgtgggatggtggaaagagaatcagagacgaaagagcccaaattccattgtcctca 443

                                                                       
Query: 181 gaagaagaatatgtggggatgaggctctactgagaatgtatttggggtcagccctggaaa 240
           ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 442 gaagaaggatatgtggggatgaggctttactgagaatgtatttggggtcagccctggaaa 383

                                                                       
Query: 241 gcgacactatattgggatacacatcaacgtgtccatgtcactacaaaagtaagaagtgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gcgacactatattgggatacacatcaacgtgtccatgtcactacaaaagtaagaagtgtg 323

               
Query: 301 tgtg 304
           ||||
Sbjct: 322 tgtg 319


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)