BAC Information

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BAC

Clone NameMSMg01-079M03
Chromosome6 (Build37)
Map Location 57,220,536 - 57,221,180
singlet/doubletsinglet
Overlap genenone
Upstream genePde1c, EG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6
Downstream geneLOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5, Pigy, Lancl2, AW146242, V1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17, EG633683, LOC626649, LOC626659, LOC626672, LOC666893, LOC100041571, V1rc33, LOC626724, V1rc25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079M03.T7 (MSMg01no079_m03.b1)MSMg01-079M03.TJ (MSMg01no079_m03.g1)
ACCAG300762AG300763
length701702
length of high quality
(start - end)
648 (46 - 693)629 (74 - 702)
definitionCHROMAT_FILE: MSMg01no079_m03.b1 PHD_FILE: MSMg01no079_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:28 2005CHROMAT_FILE: MSMg01no079_m03.g1 PHD_FILE: MSMg01no079_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:28 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTTTGTACACCAGGCAGGCCTTGAACTCAGAAATCTGCCTGCCT
CTGCCTCCTGAGTGCTGGGATTAAAGGTGTGCACCACCACAGCCGGCTAA
AATACAATTTCTTATTAAAATATGCATTAACAAAGAAATTTAGTGTAAAT
TTATTTAGGTAATGAATATCACTAACACTGTTATTATTTTTGTGGAATAT
CTTTTACTATTGTATATAAAGTTAAGATGGAAAATGAAGGCAGGTGTGTT
GGCACCCACTTATCACACTTGTGATCCCAGCACTTTCTTTCTCCCTTCCT
TTTTTTTTTTGCTTTCACAATAGTTATTTCTGATGAAGTTACAAAATAGA
CACAAAATACCTATTTTAAAAGTAAAGGTAATTACTTAGAAAAATAAATA
AAGCACTAATGTTTTAAAAATCCAACATAAACTTTTATGTGAGGAATATT
TTAAGTTGTTTCAGAGGGTAACCAAGACTACCTTGTGCACAGTATTTTTG
ATGGAGACCAACACGGAATGCTGTTCTATAATCAGCCCAGAGCACACTGG
CCCATATCCATCCAGACTGGCTTTACAGAATACCTATTTGATACACTCTG
ATGAGGAAAATGGAGTGAATTTCAATGCAGTTGCTGCTATCACATGTGCT
C
ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGAGGTTTTTCAGAAAACTGGACATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACATAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAAGTG
GATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTA
AA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_m03.b1 MSMg01no079_m03.b1 CHROMAT_FILE:
MSMg01no079_m03.b1 PHD_FILE: MSMg01no079_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:28 2005
         (648 letters)



>mm_chr6_57220333_57221380
          Length = 1048

 Score = 1185 bits (613), Expect = 0.0
 Identities = 637/645 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactttgtacaccaggcaggccttgaactcagaaatctgcctgcctctgcctcc 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactttgtagaccaggcaggccttgaactcagaaatctgcctgcctctgcctcc 263

                                                                       
Query: 64  tgagtgctgggattaaaggtgtgcaccaccacagccggctaaaatacaatttcttattaa 123
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 264 tgagtgctgggattaaaggtgtgcaccaccacagccagctaaaatacaatttcttattaa 323

                                                                       
Query: 124 aatatgcattaacaaagaaatttagtgtaaatttatttaggtaatgaatatcactaacac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatatgcattaacaaagaaatttagtgtaaatttatttaggtaatgaatatcactaacac 383

                                                                       
Query: 184 tgttattatttttgtggaatatcttttactattgtatataaagttaagatggaaaatgaa 243
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgttattatttttatggaatatcttttactattgtatataaagttaagatggaaaatgaa 443

                                                                       
Query: 244 ggcaggtgtgttggcacccacttatcacacttgtgatcccagcactttctttctcccttc 303
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| 
Sbjct: 444 ggcaggtgtgttggcacctacttatcacacttgtgatcccagcactttctttctcccttt 503

                                                                       
Query: 304 ctttttttttttgctttcacaatagttatttctgatgaagttacaaaatagacacaaaat 363
            ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttttttttttttgctttcactatagttatttctgatgaagttacaaaatagacacaaaat 563

                                                                       
Query: 364 acctattttaaaagtaaaggtaattacttagaaaaataaataaagcactaatgttttaaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acctattttaaaagtaaaggtaattacttagaaaaataaataaagcactaatgttttaaa 623

                                                                       
Query: 424 aatccaacataaacttttatgtgaggaatattttaagttgtttcagagggtaaccaagac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aatccaacataaacttttatgtgaggaatattttaagttgtttcagagggtaaccaagac 683

                                                                       
Query: 484 taccttgtgcacagtatttttgatggagaccaacacggaatgctgttctataatcagccc 543
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 684 taccttgtgcacagtatttttaatggagaccaacacggaatgctgttctataatcagccc 743

                                                                       
Query: 544 agagcacactggcccatatccatccagactggctttacagaatacctatttgatacactc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agagcacactggcccatatccatccagactggctttacagaatacctatttgatacactc 803

                                                        
Query: 604 tgatgaggaaaatggagtgaatttcaatgcagttgctgctatcac 648
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tgatgaggaaaatggagtgaatttcaatgcagttgctgctatcac 848


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)