Query= MSMg01no079_o08.b1 MSMg01no079_o08.b1 CHROMAT_FILE:
MSMg01no079_o08.b1 PHD_FILE: MSMg01no079_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:38 2005
(529 letters)
>mm_chr6_38599037_38599966
Length = 930
Score = 638 bits (330), Expect = 0.0
Identities = 439/526 (83%), Gaps = 78/526 (14%)
Strand = Plus / Plus
Query: 5 gaattctgttttacatataggatatttccaattgtcctaggcaacccctgtgaaagggtc 64
|||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 282 gaatcctgttttagatataggatatttccaattgtcctaggcaagccctgtgaaagggtc 341
Query: 65 attccatcccccaaaggggtcatggcccataggttgagaactgctgaactagagctaaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 attccatcccccaaaggggtcatggcccataggttgagaactgctgaactagagctaaag 401
Query: 125 taataagccgccatgtgggtgctgtcaacgaaaccctgagcagtaagtgcttttagtcac 184
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tagtaagccaccatgtgggtgctgtcaacgaaaccctgagcagtaagtgcttttagtcac 461
Query: 185 tgaactggctctccagccccttagacaggagggtcttacataagtattgtgacctcccag 244
||||||||||
Sbjct: 462 tgaactggct-------------------------------------------------- 471
Query: 245 ggataccttctagtcactgaactggcactccagccccttagacaggagggtcttacataa 304
|||||||||||||||||||||||||||||||||
Sbjct: 472 ---------------------------ctccagccccttagacaggagggtcttacataa 504
Query: 305 gtattgtgacctcctagggataccttctacagcagtggcgcctgaatgtagcagctggaa 364
|||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 505 gtattgtgacctcccagggataccttctacagcagtggcacctgaatgtagcggctggaa 564
Query: 365 tagtatttcagtctggaggcgttctgagaacaagagagatgagtttggctgttggagata 424
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 565 tagtatttcagtctggaggcgttctgagaacaagagagatgagtttggctgctggagata 624
Query: 425 ggcttgaggaacaaagacagagagaggggtaaagacacatcaataccagccttccacagg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggcttgaggaacaaagacagagagaggggtaaagacacatcaataccagccttccacagg 684
Query: 485 aaagctgaccttagtccccagaagtgtccctagggg-cagcacaga 529
|||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 685 aaagctgaccttagtccccagaagtgtccctagggggcagcacaga 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 930
Length adjustment: 10
Effective length of query: 519
Effective length of database: 920
Effective search space: 477480
Effective search space used: 477480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_o08.g1 MSMg01no079_o08.g1 CHROMAT_FILE:
MSMg01no079_o08.g1 PHD_FILE: MSMg01no079_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:39 2005
(473 letters)
>mm_chr6_38752623_38753493
Length = 871
Score = 876 bits (453), Expect = 0.0
Identities = 468/473 (98%), Gaps = 2/473 (0%)
Strand = Plus / Minus
Query: 1 tgtagaaaatctcagtgaaatgggtcaagaaaaaagggaggtctctataggctgactgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tgtagaaaatctcagtgaaatgggtcaagaaaaaagggaggtctctataggctgactgaa 612
Query: 61 aggcccattgcttacaggttcagggaatatggtgctatgcagattaagtagccattcata 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 aggcccattgctta-aggttcagggaatatggtgctatgcagattaagtagccattcata 553
Query: 121 gagctgggtgcctggctggcatactctgcttcaacaacacattgttatatttgaccagtc 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 552 gagctgggtgcctggctggcatactctgcttcaacaacacattgttgtatttgaccagtc 493
Query: 181 cttcactcacattggtaactcaagtctttgtgtatttctaggaacaaggttctgtctgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 cttcactcacattggtaactcaagtctttgtgtatttctaggaacaaggttctgtctgat 433
Query: 241 ctttacagcaactcaaagggtagctcagaaaccttactgtcttcattccatgggacacag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ctttacagcaactcaaagggtagctcagaaaccttactgtcttcattccatgggacacag 373
Query: 301 ggcctagccctgggttacctgtgtgctatctgtgagctagctcctgtctactcccagaaa 360
||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 372 ggcctagccctgggttatctgtgtgctatctgtgagctagctcctatctactcc-agaaa 314
Query: 361 gcaggaatttgagaatctttggctatcaggtggggtgtgggaccacctctaaccccttga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gcaggaatttgagaatctttggctatcaggtggggtgtgggaccacctctaaccccttga 254
Query: 421 aaatagccctaggaatgtgtttaagtagctttgttcctcccctatttcaaaca 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aaatagccctaggaatgtgtttaagtagctttgttcctcccctatttcaaaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 871
Length adjustment: 10
Effective length of query: 463
Effective length of database: 861
Effective search space: 398643
Effective search space used: 398643
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
