Query= MSMg01no080_a14.b1 MSMg01no080_a14.b1 CHROMAT_FILE:
MSMg01no080_a14.b1 PHD_FILE: MSMg01no080_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:49 2005
(448 letters)
>mm_chr6_91280023_91280870
Length = 848
Score = 725 bits (375), Expect = 0.0
Identities = 420/441 (95%), Gaps = 11/441 (2%)
Strand = Plus / Minus
Query: 9 tcccctctggccat-caaataaaacaaaacaaaataaaataaaataaaataaaatgccta 67
|||||||||| || ||||||||||||||| ||||||||||||||||| ||
Sbjct: 696 tcccctctggggatacaaataaaacaaaac----------aaaataaaataaaatgctta 647
Query: 68 cagatacattactaaactcaacacaagaaatgagaaaaattactgacaacatgctgaata 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 cagatacattactaaactcaacacaagaaatgagaaaaattactgacaacatgctgaata 587
Query: 128 taaacactagcaatattctatatgtgaacaaaaaccgtcccaaaagattatcttctaaga 187
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 taaacactagcagtatactatatgtgaacaaaaaccgtcccaaaagattatcttctaaga 527
Query: 188 tcatcataaagccaagaatatatgaaaacacagatgacctaggaactcacagatgatgtc 247
|||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||
Sbjct: 526 tcatcataaagccaagaatatatgaaaacacagacgacctaggaattcacagacgatgtc 467
Query: 248 ggccccagagaactaagtatactgaaagatgtcagaaatgttaacaatggcccagtgtgg 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ggccccagagaactaagtatactgaaagatgtcagaaatgttaacaatggcccagtgtgg 407
Query: 308 aaacagttcatagtcatgggtagggacatttaatgttgcaaaataatttgttcaacccta 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aaacagttcatagtcatgggtagggacatttaatgttgcaaaataatttgttcaacccta 347
Query: 368 aacacaatttgaaacaaaatcccaactaatttacctggtgattttgacagattaatttta 427
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aatacaatttgaaacaaaatcccaactaatttacctggtgattttgacagattaatttta 287
Query: 428 ttctatttgtttttttataag 448
||| |||||||||||||||||
Sbjct: 286 ttccatttgtttttttataag 266
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space: 367044
Effective search space used: 367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_a14.g1 MSMg01no080_a14.g1 CHROMAT_FILE:
MSMg01no080_a14.g1 PHD_FILE: MSMg01no080_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:49 2005
(528 letters)
>mm_chr6_91137787_91138714
Length = 928
Score = 949 bits (491), Expect = 0.0
Identities = 521/533 (97%), Gaps = 6/533 (1%)
Strand = Plus / Plus
Query: 1 tcctctttgatatccccaggaaccaggctgaggtttccaggtctctgcccacgtcttggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctctttgatatccccaggaaccaggctgaggtttccaggtctctgcccacgtcttggc 260
Query: 61 agcaccggagacatgacaggagaggtggggacccggaacttggcttagctgctaaacccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcaccggagacatgacaggagaggtggggacccggaacttggcttagctgctaaacccc 320
Query: 121 atgggattgcagtcctcttggctgcaggaatattggagccaagtcaaaactgggaagaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgggattgcagtcctcttggctgcaggaatattggagccaagtcaaaactgggaagaac 380
Query: 181 acactcccacaggaatcctctcaggcagccccagtggggacagagccagcggcttccttt 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 acactcccacaggaatcctctcaggcagccccagtggggacagagccagtggcttccttt 440
Query: 241 cctctgaaaagggtccctagctgaagaaactcaaactttggtctattgtgacagttcagc 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctctgaaaagggtctctagctgaagaaactcaaactttggtctattgtgacagttcagc 500
Query: 301 agaatcaacatgcccatggaaccctatggaagagccttct-gccccaggagggcttcctg 359
|||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct: 501 agaatcaacatgcccatggaaccctatggaagagccttctagtcc-aggagggcttcctg 559
Query: 360 aaggaagaggcacacgagctaagccttaaagagtaaataaagtgttcctgtgttagaaac 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 560 aaggaagaggcacacgagctaagccttaaagagtaaataaagtgttcctgtgttaggaac 619
Query: 420 attgattc----tggtagaaggaacagcacatgtaaaattccacaggcatgaagaagcta 475
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 attgattgattgtggtagaaggaacagcacatgtaaaattccacaggcatgaagaagcta 679
Query: 476 tgtagatacctatagctaagtactggagattctgaggacaagaggaaaggtgg 528
|||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgtagatatctatagctaagtactggagattctgaggacaagaggaaaggtgg 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space: 475524
Effective search space used: 475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
