BAC Information

Click to search

BAC

Clone NameMSMg01-080E24
Chromosome6 (Build37)
Map Location 105,890,688 - 105,891,236
singlet/doubletsinglet
Overlap geneCntn4
Upstream geneLOC384470, LOC100043716, LOC100043350
Downstream geneIl5ra, Trnt1, Crbn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080E24.T7 (MSMg01no080_e24.b1)MSMg01-080E24.TJ (MSMg01no080_e24.g1)
ACCAG301186AG301187
length710710
length of high quality
(start - end)
551 (37 - 587)521 (66 - 586)
definitionCHROMAT_FILE: MSMg01no080_e24.b1 PHD_FILE: MSMg01no080_e24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:10 2005CHROMAT_FILE: MSMg01no080_e24.g1 PHD_FILE: MSMg01no080_e24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGATCCGCGGAATTCCACT
TGATACCAGACATAGCCATTTGGGGAATATACAAATTAAAAGGTTCCAAG
ATAGAAATAGGAACATTAGCAGCAGGGAGTGTCTTGGGGATACACTGTGT
CAGATTGCATCCAGGAGTTGGGAGAATAAGTGAGTCATAGTCTTCCAAAG
GATAAACCATGCTGTGTTAACACTTGGGCAACCTCTGAATCTGTAGTAGT
TATTTAAAGTTGCCAGGGATGGCTTTAATACTGGCAAGTCTGCACTGCTT
AGGGACATCTTTGAATCATGCACAGTGTGACTGCACTCCATGTTGCTTCA
GCATTTCTCCTAACTTCTAAGTTGTAAGTCAGGCATGGTCATAGGATTTT
GTCTGGTTTCTCTGCCCCCTCCCCCAAGGAAAAATACAGAGATGTACAAA
GTTAAAGATGTTTTGCCTAGGTCATCCATTGATTCTCACAATTAGCTACA
CAATTGTGATGGTGAGTTTTATGTGGTCTTTATCAGAATATATAGGACAT
GTATTCTGTCATAGATAAATCAGATCTCTGTGTTTGCCAAGAAATCCTAG
TTATGACTAAGAAAAACCTCCTTAAACTAGGCCAATTAGTTTACTGGCAC
AATCTGAAGTACTTTATAGAAACAACATGTATGTATGGATGGATGGATGC
ATTGCCTGTT
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTCTAGGTTTTAGATAAAAGGCCATCTTTAAATG
TTTTTTTTTTGTTTTGTTTTTTTTTTTTTACAAATTAGTTTACTCCTGCA
TGCAGCTAGACATTTTCATTCTCTAGGCAATGTGTTTTATAGAGCTGAAA
CATAAATTTTAATAATATTAAGCTTATTGATTTACTTTTTAATGAAATGT
CTTTGTTCAAACTGAGGTTTATTGGAGATTGGTTCTGATGCTTTGATTCA
ATCAGTCATCTGTGTGACCAAGCACTGATGGTTCTTGTCCCCAACTGGTT
TTTGATCAAACTGGTTTTTGAGCAACCAATAAAGATGACAGAGGCCAATG
GCTGGGCAAAGGAAGACAGGGAGGTACCCTTATAGTTGTGCAGGCTAGGA
TGCAGTGGGGGAGGAGACAGAGACTGCCACAACTGGAGGAGAAGGATGGG
ATGCAGGAGCTGCAGGAAAGAAAGCCAACCAGCCATGTAAGATTTCAGGA
AAGTGGCCCTGGCCACTTCCCAGATTAGGCCTATGTTAGCAGGCAGAGGA
TTAGAAGTGCGAGCTAGATTGCATGTTAAAATAAACCAGCATATGCATGT
GTGTGTGTGTGTGCGCCCCACCCATGATCCCAACAACCCCTGTTCACACC
GCTTGCACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_e24.b1 MSMg01no080_e24.b1 CHROMAT_FILE:
MSMg01no080_e24.b1 PHD_FILE: MSMg01no080_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:10 2005
         (551 letters)



>mm_chr6_105890484_105891436
          Length = 953

 Score =  984 bits (509), Expect = 0.0
 Identities = 539/551 (97%), Gaps = 6/551 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacttgatac---cagacatagccatttggggaatatacaaattaaaaggttcc 61
           |||||||||||||  |   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacttga--caagcagacatagccatttggggaatatacaaattaaaaggttcc 262

                                                                       
Query: 62  aagatagaaataggaacattagcagcagggagtgtcttggggatacactgtgtcagattg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aagatagaaataggaacattagcagcagggagtgtcttggggatacactgtgtcagattg 322

                                                                       
Query: 122 catccaggagttgggagaataagtgagtcatagtcttccaaaggataaaccatgctgtgt 181
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 323 catccaggagttgggagaataagtgagtcatagccttccaaaggataaaccatgctgtgt 382

                                                                       
Query: 182 taacacttgggcaacctctgaatctgtagtagttatttaaagttgccagggatggcttta 241
           || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tagcacttgggcaacctctaaatctgtagtagttatttaaagttgccagggatggcttta 442

                                                                       
Query: 242 atactggcaagtctgcactgcttagggacatctttgaatcatgcacagtgtgactgcact 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atactggcaagtctgcactgcttagggacatctttgaatcatgcacagtgtgactgcact 502

                                                                       
Query: 302 ccatgttgcttcagcatttctcctaacttctaagttgtaagtcaggcatggtcataggat 361
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 503 ccatgttgcttcagcatttctcctaacttctaagttgtaagtcaggcatagtcataggat 562

                                                                       
Query: 362 tttgtctggtttctctgccccctccccc-aaggaaaaatacagagatgtacaaagttaaa 420
           ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 563 tttgtctcgtttctctgccccctccccccaaggaaaaatacagagatgtacaaagttaaa 622

                                                                       
Query: 421 gatgttttgcctaggtcatccattgattctcacaattagctacacaattgtgatggtgag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gatgttttgcctaggtcatccattgattctcacaattagctacacaattgtgatggtgag 682

                                                                       
Query: 481 ttttatgtggtctttatcagaatatataggacatgtattctgtcatagataaatcagatc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 683 ttttatgtggtctttatcagaatatataggacatgtattctgtcatagatagatcagatc 742

                      
Query: 541 tctgtgtttgc 551
           |||||||||||
Sbjct: 743 tctgtgtttgc 753


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 953
Length adjustment: 10
Effective length of query: 541
Effective length of database: 943
Effective search space:   510163
Effective search space used:   510163
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)