BAC Information

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BAC

Clone NameMSMg01-080G21
Chromosome6 (Build37)
Map Location 35,151,140 - 35,151,612
singlet/doubletsinglet
Overlap geneNup205
Upstream geneAkr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4
Downstream gene1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312, LOC100039327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080G21.T7 (MSMg01no080_g21.b1)MSMg01-080G21.TJ (MSMg01no080_g21.g1)
ACCAG301274AG301275
length713724
length of high quality
(start - end)
480 (37 - 516)461 (67 - 527)
definitionCHROMAT_FILE: MSMg01no080_g21.b1 PHD_FILE: MSMg01no080_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:20 2005CHROMAT_FILE: MSMg01no080_g21.g1 PHD_FILE: MSMg01no080_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGGAATTCCA
AGTTGATCCCAGAATGAAATGAACTGCTCAGGTTGACATTTGTCTGGAAT
ATAGAACTGGATTTTCTAGGATTTTTCTAATTATGTTTGATGTTGTTATG
CTGTAAAAATACTAAACTTAACTATAATGTCTTATTGAAATAAAATAACG
TAATCCTTGATAAAATATTTCTGTAAAGTGATTTTTTAAAGAAGTTTTTT
TTTTTTTTTTAAAGATTTAAAAAATAAAATGTGTGAATACACTGTTGCTG
TCTTCAGACACACCAGAAGAGGGCATCAGATCTCATTACAGATGGTTGTG
AGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACTTCTGAAAGAGCAG
TCAGTGCTCTTAACTGCTAAGCTATCTCCCCAACTCCTTAAAACATTATT
TGTTGACTCATTCATGAATTACATATATTTTAGTGTAATAGCACTATGCT
GTTCTAGAAAGGACTTAACAGTGCCTTTGATTTTTGTCACTCTAGCAGGA
CATTTATCTGCTTGCAGAATTTATGCCCCTGGGCTTGTGAAAGAATTTAA
CTTCCATTCTTTTCCTGACCAAACTAGTGATCTACCACCTAAAAAACAGA
TACCTTCTTTGTTGTGGAATATATTATATGTAAATAGCGCAAACCTGGCT
CTCCGCCCCTTCT
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAAAAGAACGTGGGCTCACAAGATCTAGCTCTGC
AGCTACCAGATCAAGTTGATCCAGCCAAGACCATCACTTAAAAGAAGTTG
GGGGGGGGTCTTTTTCGTCTTGTTCCAAATCTGTCCTTTCTGAATATGAA
AATGAAAAAAAGAAAGGCTAAATCGCCGGGCGTAGTGGCGCACGCCTTTA
ATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCA
GCCTGGTCTACAAAGTGAATTCCAGGACAGCCAGAACTATACAGAGAAAC
CCTGTCTCGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA
AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGAAAGGAAGAAAGGAA
GAAAGGAAGAAAGAAAGAAAGAAAGAAGAAAGACAGATAGATAGAAAGAC
CGAAAGAAAGACAGAAAGAAAGAAAGAATGATAGACCGAAAGAATGATAG
AAAGATAGAAAGATAGAAAGAACGACAGACAGAATGATAGAATGAACGAC
CGATAGAACGATAGGCTAGATCATTTCTCCTAATGAAATTCCCAGTATGA
CTATTGATTAACCTTGCCCGCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_g21.b1 MSMg01no080_g21.b1 CHROMAT_FILE:
MSMg01no080_g21.b1 PHD_FILE: MSMg01no080_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:20 2005
         (480 letters)



>mm_chr6_35150934_35151813
          Length = 880

 Score =  878 bits (454), Expect = 0.0
 Identities = 469/474 (98%), Gaps = 1/474 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattccaagttgatcccagaatgaaatgaactgctcaggttgacatttgtctggaatat 66
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattccaagttgatcctagaatgaaatgaactgctcaggttgacatttgtctggaatat 266

                                                                       
Query: 67  agaactggattttctaggatttttctaattatgtttgatgttgttatgctgtaaaaatac 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 agaactggattttctaggatttttctaattatgtttgatgttgttatgctgtaaaaatac 326

                                                                       
Query: 127 taaacttaactataatgtcttattgaaataaaataacgtaatccttgataaaatatttct 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 taaacttaactataatgtcttattgaaataaaataacgtaatccttgataaaatatttct 386

                                                                       
Query: 187 gtaaagtgattttttaaagaagttttttttttttttttaaagatttaaaaaataaaatgt 246
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 387 gtaaagtgattttttaaagaagttttttttttttttt-aaagatttaaaaaataaaatgt 445

                                                                       
Query: 247 gtgaatacactgttgctgtcttcagacacaccagaagagggcatcagatctcattacaga 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gtgaatacactgttgctgtcttcagacacaccagaagagggcatcagatctcattacaga 505

                                                                       
Query: 307 tggttgtgagccaccatgtggttgctgggaattgaactcaggacttctgaaagagcagtc 366
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ttgttgtgagccaccatgtggttgctgggaattgaactcaggacttctgaaagagcagtc 565

                                                                       
Query: 367 agtgctcttaactgctaagctatctccccaactccttaaaacattatttgttgactcatt 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 agtgctcttaactgctaagctatctccccaactccttaaaacattatttgttgactcatt 625

                                                                 
Query: 427 catgaattacatatattttagtgtaatagcactatgctgttctagaaaggactt 480
           ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 626 catgaattagatatattttagtgtaatagtactatgctgttctagaaaggactt 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)