Query= MSMg01no080_i21.b1 MSMg01no080_i21.b1 CHROMAT_FILE:
MSMg01no080_i21.b1 PHD_FILE: MSMg01no080_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:30 2005
(617 letters)
>mm_chr6_52722772_52723788
Length = 1017
Score = 600 bits (310), Expect = e-175
Identities = 319/322 (99%), Gaps = 1/322 (0%)
Strand = Plus / Minus
Query: 4 ggaattccatgcatgccacgcaagtactcttttactgacctacaacctgggagttctttt 63
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 322 ggaattccatgcatgccaggcaagtactctgttactgacctacaacctgggagttctttt 263
Query: 64 cttctaaattgtcattgtcccccttcctctctccgtccctgcacataacacctacatctt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cttctaaattgtcattgtcccccttcctctctccgtccctgcacataacacctacatctt 203
Query: 124 gtcttagttacagttactgttgctgtgatgtaacaccatgaccaaagacaacttggggag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gtcttagttacagttactgttgctgtgatgtaacaccatgaccaaagacaacttggggag 143
Query: 184 gaaagggtttattcctacttagtttcctataatagtttatcataagaagcagtgagggaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 gaaagggtttattcctacttagtttcctataatagtttatcataagaagcagtgagggaa 83
Query: 244 ggaactcaagcaggacaggaacctggaggcaggagctgatgcagaggccatgg-gggtgc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 82 ggaactcaagcaggacaggaacctggaggcaggagctgatgcagaggccatggagggtgc 23
Query: 303 cgcttactgtcttgttttccat 324
||||||||||||||||||||||
Sbjct: 22 cgcttactgtcttgttttccat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_i21.g1 MSMg01no080_i21.g1 CHROMAT_FILE:
MSMg01no080_i21.g1 PHD_FILE: MSMg01no080_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:30 2005
(589 letters)
>mm_chr6_52618734_52619722
Length = 989
Score = 1035 bits (535), Expect = 0.0
Identities = 573/589 (97%), Gaps = 8/589 (1%)
Strand = Plus / Plus
Query: 1 cctggggctttgtcccccacaacaac--cacacgttgatcagttctgagacaatgcttta 58
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 201 cctggggctttgtcccccacaacaactgcaca--ttgatcagttctgagacaatgcttta 258
Query: 59 taaatctgtttgcactatcatggaagaataatacgtttattttaacaacataacctattc 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 taaatctgtttgcactatcatggaagaataatacgtttattttaacaacataacctattc 318
Query: 119 tgtaactcttgtttttaatattaggaatgaatgcaggacctcctgcatgctatgcacata 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgtaactcttgtttttaatattaggaatgaatgcaggacctcctgcatgctatgcacata 378
Query: 179 tgttctccaactcttgtagcccagtaaagattcccttggttccttagtaggtgccgttct 238
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 379 tgttctccaactcttgtagcccagcaaagattcccttggtcccttagtaggtgccgttct 438
Query: 239 acgtagggtttccccttttcatagatgtctagagctccattaataactgttagagtatag 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 acgtagggtttccccttttcatagatgtctagagctccattaataactgttagagtatag 498
Query: 299 cctgactttctgtctcaaagcaccaaatcaactcttccttgaaagaaacaggataatgca 358
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cctgactttctgtctcaaggcaccaaatcaactcttccttgaaagaaacaggataatgca 558
Query: 359 tccaaacacagactaaaggaatgaccagatctcaagcatgcataataggaaacaatgtgg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tccaaacacagactaaaggaatgaccagatctcaagcatgcataataggaaacaatgtgg 618
Query: 419 catcaatgagcagaggcattcaggtgtggcggcgcatctataatactggcacttaggaga 478
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 619 catcaatgagcagaggcattcaggtgtggtggcacatctataatactggcacttaggaga 678
Query: 479 cagaggcaggaggatcaggaattcaaggtcagccactgatactcatcaagtttaaggtca 538
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 679 cagaggcaggaggatcgggaattcaaggtcagcctctgatactcatcaagtttaaggtca 738
Query: 539 gcctagcctatgtaagtctctgtctcaaagaaacaaacaaaagaaagag 587
| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 739 gtctagcctatgtaagtctctgtctcaaagaaacaaa----agaaagag 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
