BAC Information

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BAC

Clone NameMSMg01-080L15
Chromosome6 (Build37)
Map Location 66,494,529 - 66,495,001
singlet/doubletsinglet
Overlap genenone
Upstream gene9030611K07Rik, A930038C07Rik, LOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1, LOC100041916, Tpm3-rs3, LOC627751, Mad2l1
Downstream geneV1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080L15.T7 (MSMg01no080_l15.b1)MSMg01-080L15.TJ (MSMg01no080_l15.g1)
ACCAG301494AG301495
length694699
length of high quality
(start - end)
472 (63 - 534)491 (70 - 560)
definitionCHROMAT_FILE: MSMg01no080_l15.b1 PHD_FILE: MSMg01no080_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:43 2005CHROMAT_FILE: MSMg01no080_l15.g1 PHD_FILE: MSMg01no080_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
CTTTTGACTGAGAATTTCTACCCTGTGTGGGTTTAAGTCATGCTTTATCT
GTTTGTCAATCTGGATGTTTGGTATGTTTTCATGTTTCAGCTAGTGTGAA
TATTGCAGTCATGACTGCATAACATATATTTAAGTCCATGCTTTTAATTA
TTTGGGGGGGATATAACCAAATACACTGCAGGATTGTATAAAAATGCTGT
TTTTCAATTTTTTGAGGAACCAACATTCTATTTTCTACAATGGCTGTTGA
GGACAGTCATATCTCACAACATAGCCAATTTATATGTAAATTCTAGTTTC
TTTTTATCTGTTCAATACATTACTGCTGGTAAAGATTTTAAGGCCTCTCA
CTGGCACCACCCTTCAAAGCCCTTCTAGTTTTCAGTTGTAGCACACGTCC
TAATGGTCAGTAAATGTTTATGGTTCCTATGTCTCCTTTCTGTACTGACC
CTGTAAAACATACCCTTTGTGTTTTGCCTTTCTGACCGAAAGTCCTTCGC
CCTTGCCTGACTCCTCCATCCTTGCTCTCTACCTGACACGTCCTCATCCC
TGCCGCTTTTTTGCCTGAGAATTTTCTTTCCAAAATTTACTTGCCGAGGC
ATTCCTTTTTTTTCACCCCATTTTGCCCTTTTCACCCTTTAATT
TAATGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCACTGTGTAAATGAACTGCATTTTTCCTGTC
CATTTTTCTTTCCTGGACATCTGGGTTGTTTCTGGCTTGTTTCTGGCTTC
TGGTTATCTCAAACAAGCCTGTTATGAACACAATGGAACACGTGCCCCTG
TGGCATGGTGGGGCATCATTTGGTTTATTCCCAAGAATGGTATTGCTGTG
TCTTCAGGTAGATCTATATCTAATTTTCTGAGGAACCTCTAAACTGACTT
CCTGAGTGGTTGTACCAGTTTGCAATCCCACCAGCAATTGAGGAGCATTC
TTCTTTATCCACATCCTCACCAACATGTGTTGTCACTTGAGGTTTTGATC
TTAACTATTCCGATTTCTGTAAGGTGGAATCTCAGGGTAATTTTGTTTTG
CAATTCTCTGAACACTAAGGACTTTGAATATTCCTTTGGGTGCTTCTCAG
CCATTCAAGATTCCTCTGTTTGAATTCTGGGTTTAGTTCTATACCCCATT
TTTGATTGACTTGCTTGCTTGTCACCCACCCCCCCATTTTTTTCCCCCCC
TTCCCCCTTCCTTTTCTCCCCTTTTATTTTCCCTCCCCCTTACCTCCTTA
AATCACCCCCCTTCTTTTACTATTCTCACTTCTCCCTCCCTCTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_l15.b1 MSMg01no080_l15.b1 CHROMAT_FILE:
MSMg01no080_l15.b1 PHD_FILE: MSMg01no080_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:43 2005
         (472 letters)



>mm_chr6_66494331_66495202
          Length = 872

 Score =  818 bits (423), Expect = 0.0
 Identities = 460/473 (97%), Gaps = 2/473 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatttctaccctgtgtgggtttaagtcatgctttatctgtttgtcaatctggatgtttgg 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 aatttttaccctgtgtgggtttaagtcatgctttatctgtttgtcaatctggatgtttgg 258

                                                                       
Query: 61  tatgttttcatgtttcagctagtgtgaatattgcagtcatgactgcataacatatattta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tatgttttcatgtttcagctagtgtgaatattgcagtcatgactgcataacatatattta 318

                                                                       
Query: 121 agtccatgcttttaattatttggggggg--atataaccaaatacactgcaggattgtata 178
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 319 agtccatgcttttaattatttgggggggggatataaccaaatacactgcaggattgtata 378

                                                                       
Query: 179 aaaatgctgtttttcaattttttgaggaaccaacattctattttctacaatggctgttga 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aaaatgctgtttttcaattttttgaggaaccaacattctattttctacaatggctgttga 438

                                                                       
Query: 239 ggacagtcatatctcacaacatagccaatttatatgtaaattctagtttctttttatctg 298
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ggacagtcatgtctcacaacatagccaatttatatgtaaattctagtttctttttatctg 498

                                                                       
Query: 299 ttcaatacattactgctggtaaagattttaaggcctctcactggcaccacccttcaaagc 358
           ||||||||||||||||||||||||||||||| |||||||||||| |  |  |||||||||
Sbjct: 499 ttcaatacattactgctggtaaagattttaaagcctctcactggtattattcttcaaagc 558

                                                                       
Query: 359 ccttctagttttcagttgtagcacacgtcctaatggtcagtaaatgtttatggttcctat 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ccttctagttttcagttgtagcacacgtcctaatggtcagtaaatgtttatggttcctat 618

                                                                
Query: 419 gtctcctttctgtactgaccctgtaaaacataccctttgtgttttgcctttct 471
           ||||||||| |||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 619 gtctcctttatgtactgaccctgtaaaatataccctttgtgttttgtctttct 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)