Query= MSMg01no080_m21.b1 MSMg01no080_m21.b1 CHROMAT_FILE:
MSMg01no080_m21.b1 PHD_FILE: MSMg01no080_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:49 2005
(564 letters)
>mm_chr6_22005170_22006135
Length = 966
Score = 944 bits (488), Expect = 0.0
Identities = 543/562 (96%), Gaps = 4/562 (0%)
Strand = Plus / Minus
Query: 6 gaattcacattgggctccg-ctgttagaacagtgcctgaatacttgatctgaaaggcttt 64
||||||||||||| || | |||||||||||| |||||||||||||||||||||||||||
Sbjct: 766 gaattcacattggact-agtctgttagaacagcgcctgaatacttgatctgaaaggcttt 708
Query: 65 ctgagaaagcaggcattggaagtcagactccccaagtgtggctccttattagttctttca 124
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 707 ctgagaaagcaggcattggaagtcagactccccaagagtggctccttattagttctttca 648
Query: 125 tcactaagaggtcttagagaactgtcctagccgctgtgtgctgctgtctcttctgctgta 184
| |||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||
Sbjct: 647 ttactaagaggtcttagagaactgtcttagccgctgtgtgctactgtctcttccgctgta 588
Query: 185 aagaaagcaccagtgcaagccggaatgctcaggactcgactggtgcaccctaaaacctcg 244
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 587 aagaaagcaccagtgcaagccggaatgctcaggacgcgactggtgcaccttaaaacctcg 528
Query: 245 caagcgttagctgctgctatctctcatttgtatagccaccccagctaggccaactcaccc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 caagcgttagctgctgctatctctcatttgtatagccaccccagctaggccaactcaccc 468
Query: 305 tcatctgggtgaatcatctcaggaactggcttcctccactcactcattgcttctgaagtg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tcatctgggtgaatcatctcaggaactggcttcctccactcactcattgcttctgaagtg 408
Query: 365 tttacttcaacatagctgccagggtaaagccggtaaaactgcaacgggattcctgtcgcc 424
||| |||||||||||||||||||| |||||| || ||||||||| |||||||||||||||
Sbjct: 407 ttttcttcaacatagctgccagggcaaagccagttaaactgcaatgggattcctgtcgcc 348
Query: 425 cctctactcaaaatcctccatcaacccaccccttcaccaaggacaaaatctgtggtcatt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 cctctactcaaaatcctccatcaacccaccccttcaccaaggacaaaatctgtggtcatt 288
Query: 485 aaaaagatctccatgtcacatataagaa--ccccccccccactccaagaacatttctacc 542
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 287 aaaaagatctccatgtcacatataagaaccccccccccccactccaagaacatttctacc 228
Query: 543 ttctgctccttccacactaacc 564
||||||||||||||||||||||
Sbjct: 227 ttctgctccttccacactaacc 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 966
Length adjustment: 10
Effective length of query: 554
Effective length of database: 956
Effective search space: 529624
Effective search space used: 529624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_m21.g1 MSMg01no080_m21.g1 CHROMAT_FILE:
MSMg01no080_m21.g1 PHD_FILE: MSMg01no080_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:49 2005
(552 letters)
>mm_chr6_21859016_21859966
Length = 951
Score = 1029 bits (532), Expect = 0.0
Identities = 547/552 (99%), Gaps = 1/552 (0%)
Strand = Plus / Plus
Query: 1 cttatcttcttctatctttctatatggtcctttctttatccgttcttaactctgtgagga 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 cttatcttcttctatctttctatatggtcctttctttatctgttcttaactctgtgagga 260
Query: 61 gcaggatgaagactgggagaggctggactgaagagcttactggtagaagaaaaatgcaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaggatgaagactgggagaggctggactgaagagcttactggtagaagaaaaatgcaaa 320
Query: 121 gtacttccacttcttttgccctacatttctaagttgtaatcctttgaatttcagggttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtacttccacttcttttgccctacatttctaagttgtaatcctttgaatttcagggttct 380
Query: 181 gtaccagaaattgccagaagtaaaattgtctagattgcccaatgaggtatttaaaacaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaccagaaattgccagaagtaaaattgtctagattgcccaatgaggtatttaaaacaat 440
Query: 241 gttctctcctgtgaatttccacgagctactgatgtatgctttaacaacagttcctaatga 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 gttctctcctgtgaatttccacgagctactgatgtatgctttaacaacagtttctaatga 500
Query: 301 gtctaactttatgtatttgtttatttactccagaaaactatttttttgaaaagactatgg 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 gtctaactttatgtatttgtttatttactccagaaaactatttttt-gaaaagactatgg 559
Query: 361 ttgctacactgtgcatttggagattttaatcaaaatttatagtaaataagcttaactaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttgctacactgtgcatttggagattttaatcaaaatttatagtaaataagcttaactaca 619
Query: 421 agaaccaatttgtgctagctactatacttttaatctaaaatataagttagaacaacttta 480
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 acaaccaatttgtgctagctactatacttttaatctaaaatataagttagaacaacttta 679
Query: 481 ggccattagctacttttatgtaattgcaataattcaaaacttactttctccttgaagact 540
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ggccattagttacttttatgtaattgcaataattcaaaacttactttctccttgaagact 739
Query: 541 ttacaaattgac 552
||||||||||||
Sbjct: 740 ttacaaattgac 751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 951
Length adjustment: 10
Effective length of query: 542
Effective length of database: 941
Effective search space: 510022
Effective search space used: 510022
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
