Query= MSMg01no080_n17.b1 MSMg01no080_n17.b1 CHROMAT_FILE:
MSMg01no080_n17.b1 PHD_FILE: MSMg01no080_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:53 2005
(571 letters)
>mm_chr6_102059518_102060489
Length = 972
Score = 1067 bits (552), Expect = 0.0
Identities = 564/568 (99%), Gaps = 1/568 (0%)
Strand = Plus / Plus
Query: 5 ggaattctatttat-tactataacaatggtagtttcatcaacagtttgtttctgtcaatt 63
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 205 ggaattctatttacatactataacaatggtagtttcatcaacaatttgtttctgtcaatt 264
Query: 64 ataggtggtggactggaaataaccatagtaggtgctaacaaaatcaacaaagagatgata 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ataggtggtggactggaaataaccatagtaggtgctaacaaaatcaacaaagagatgata 324
Query: 124 catagtgagaacgacacagtggtcaccctctcttaccaaagtagtatcaccttctagtgg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catagtgagaacgacacagtggtcaccctctcttaccaaagtagtatcaccttctagtgg 384
Query: 184 ggcaaggagaataacatttttttaaaaaatggagaaaactcattatgagattgcttatta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggcaaggagaataacatttttttaaaaaatggagaaaactcattatgagattgcttatta 444
Query: 244 attaaagtacagcctaagggcttatgactgattactaaaggtttgagcagaacaggttga 303
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 attaaagtacagcctaagggcttatgactgaatactaaaggtttgagcagaacaggttga 504
Query: 304 ggagtctagcggaccctagatgacattacagactgtatataaccagatgcatgttggaga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggagtctagcggaccctagatgacattacagactgtatataaccagatgcatgttggaga 564
Query: 364 gctatcctcacaaactccgaattagagacaagagagtgctctagagtcaatgaggggagc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gctatcctcacaaactccgaattagagacaagagagtgctctagagtcaatgaggggagc 624
Query: 424 acagtcagtgagttaagaccctttactggtcatgttcccctatgaacagaggggtacctt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acagtcagtgagttaagaccctttactggtcatgttcccctatgaacagaggggtacctt 684
Query: 484 ccacagagcagtactaagtctcattttcctctgctgaagattttttccaggagcctccac 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccacagagcagtactaagtctcattttcctctgctgaagattttttccaggagcctccac 744
Query: 544 caggtcctccttcctgtgtgaagagaac 571
||||||||||||||||||||||||||||
Sbjct: 745 caggtcctccttcctgtgtgaagagaac 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 972
Length adjustment: 10
Effective length of query: 561
Effective length of database: 962
Effective search space: 539682
Effective search space used: 539682
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_n17.g1 MSMg01no080_n17.g1 CHROMAT_FILE:
MSMg01no080_n17.g1 PHD_FILE: MSMg01no080_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:53 2005
(544 letters)
>mm_chr6_102199188_102200131
Length = 944
Score = 1036 bits (536), Expect = 0.0
Identities = 542/544 (99%)
Strand = Plus / Minus
Query: 1 aaaagatgaaaggtccaaatggtacgggtaaaggaaagtaactataatactaattttcta 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aaaagatgaaaggcccaaatggtacgggtaaaggaaagtaactataatactaattttcta 685
Query: 61 aagacagtctgtgagagacctttgagcccaagagggaacaattttgctgagtatgttggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aagacagtctgtgagagacctttgagcccaagagggaacaattttgctgagtatgttggg 625
Query: 121 gcaaacgtactgtctgcctttttatttctctaacacatattttctcacatgctttcatca 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 624 gcaaacgtactgtctgcctttttatttctctaaaacatattttctcacatgctttcatca 565
Query: 181 atatatgtttgctttccttaactgtcactattaatcctgtaataaatacattacaaaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atatatgtttgctttccttaactgtcactattaatcctgtaataaatacattacaaaaac 505
Query: 241 ttttctcctacagctaattgtaagcattccatcttgtggaatgtgcactcagaaaatgct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttttctcctacagctaattgtaagcattccatcttgtggaatgtgcactcagaaaatgct 445
Query: 301 atccaaaatagccttgttattttctgtgcagcagtttaatcattgtgatctcatgtgagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atccaaaatagccttgttattttctgtgcagcagtttaatcattgtgatctcatgtgagc 385
Query: 361 tcatctccactgagatgtagttcctgacaaaaatgttcactttagtgtgtttgttaaaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcatctccactgagatgtagttcctgacaaaaatgttcactttagtgtgtttgttaaaac 325
Query: 421 tcaaggtgaataaattactgtaatactccaatcataagccagggaaaacaatattttcag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcaaggtgaataaattactgtaatactccaatcataagccagggaaaacaatattttcag 265
Query: 481 aaattctgcttgctgtgcagaaggctccatcctttttctatttgaaagcatactgtgcta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaattctgcttgctgtgcagaaggctccatcctttttctatttgaaagcatactgtgcta 205
Query: 541 ttac 544
||||
Sbjct: 204 ttac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
