Query= MSMg01no080_n18.b1 MSMg01no080_n18.b1 CHROMAT_FILE:
MSMg01no080_n18.b1 PHD_FILE: MSMg01no080_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:53 2005
(637 letters)
>mm_chr6_93130534_93131570
Length = 1037
Score = 1002 bits (518), Expect = 0.0
Identities = 627/720 (87%), Gaps = 88/720 (12%)
Strand = Plus / Plus
Query: 5 gaattcttttaccacccgttgcttcctgtgtggtctccaggaaagggtcggcttccttct 64
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 117 gaattcttttaccacctgttgcttcctgtgtggtctccgggaaagggtcggcttccttct 176
Query: 65 gctgcagttttcaccctggtcatacagagcccttcctaggatggttgtagatattacata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 gctgcagttttcaccctggtcatacagagcccttcctaggatggttgtagatattacata 236
Query: 125 agacactgtaggcaaagcactcgacacttcaaaaaagaagtttaagcaaggctatttctc 184
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 237 agacactgtaggcaaagcactcgacactttaaaaaagaagtttaagcaaggctatttctc 296
Query: 185 cactactggtaattgctagcattctcacaccgtggtcccatccgttgctggaataaggct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 cactactggtaattgctagcattctcacaccgtggtcccatccgttgctggaataaggct 356
Query: 245 cctgaagaaaatacttctctttgtttatggacaagtctgatttctggttttgctcctact 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 cctgaagaaaatacttctctttgtttatggacaagtctgatttctggttttgctcctact 416
Query: 305 tagaattagatcccttaggaaacacaaagccgagggaacagctcgaaatctgggattaga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tagaattagatcccttaggaaacacaaagccgagggaacagctcgaaatctgggattaga 476
Query: 365 ctaacagcacaggcagatccaccatggagctatgcacacagtaaatccctcagcttcgct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ctaacagcacaggcagatccaccatggagctatgcacacagtaaatccctcagcttcgct 536
Query: 425 gaactgtgcacaactaacatatctccccactgcagatctctctctctctctct------- 477
|||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 537 aaactgtgcacaactaacatatctccccagtgcagatctctctctctctctctgtctctc 596
Query: 478 -------------------ctctctctctctctc-c------------------------ 493
||||||||||||||| |
Sbjct: 597 tctctgtctctctctctgtctctctctctctctctctcactctctctctctctctctctg 656
Query: 494 -------------------------------------ctctctctctctctctctctctc 516
|||||||||||||||||||||||
Sbjct: 657 tctctctctctctctctctctctctctctctctctctctctctctctctctctctctctc 716
Query: 517 cccacccccactggctgtttgtagcatgttaggagcagacttaattaaatccctaaacaa 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 cccacccccactggctgtttgtagcatgttaggagcagacttaattaaatccctaaacaa 776
Query: 577 ggaaatggcagactccaaaggagatagaggaatgcctgcgtccaaaccaaacaaaggaga 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 ggaaatggcagactccaaaggagatagaggaatgcctgcgtccaaaccaaacaaaggaga 836
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_n18.g1 MSMg01no080_n18.g1 CHROMAT_FILE:
MSMg01no080_n18.g1 PHD_FILE: MSMg01no080_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:53 2005
(572 letters)
>mm_chr6_93221896_93222867
Length = 972
Score = 905 bits (468), Expect = 0.0
Identities = 485/494 (98%), Gaps = 6/494 (1%)
Strand = Plus / Minus
Query: 1 ctctcttctggctgaagtttccatttctgtgctatagaaggatacctgggacaagagtga 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 494 ctctcttctggctgaagtttccgtttctgtgctatagaaggatacctgggacaagagtga 435
Query: 61 gagaggctcagcagtgctttaccctgtgcctttaatcagcttagtcctcactacagttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gagaggctcagcagtgctttaccctgtgcctttaatcagcttagtcctcactacagttta 375
Query: 121 atcaacaggagcgtcccttagacagaacagttattcttcattttgcatacagaaaatcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 atcaacaggagcgtcccttagacagaacagttattcttcattttgcatacagaaaatcag 315
Query: 181 ctcagtaccatagactcccaggtccatatcaatcagcatgtgaaagtgcacataaataca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ctcagtaccatagactcccaggtccatatcaatcagcatgtgaaagtgcacataaataca 255
Query: 241 tctccagtctttattttgcaaagtcgtggagatgccacgtttaagg------tttttttt 294
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 254 tctccagtctttattttgcaaagtcgtggagatgccacgtttaaggtttttttttttttt 195
Query: 295 acagatttctgtgcatttctttgaacccatttattttctttcatctgctaaagaaaatat 354
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 194 acagatttctgtgcatttctttgaacccatttattttctttcatctggtaaagaaaatat 135
Query: 355 acagaacaggaaggaacattttattccctggccgaatgctaacagctgcaactccagact 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 acagaacaggaaggaacattttattccctggccgaatgctaacagctgcaactccagact 75
Query: 415 gccccagagttctgtaaggtcattttacaggtgcagggaattcagccagtttgatgagag 474
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 74 gccccagagttctgtaaggtcattttacaggggcagggaattcagccagtttgatgagag 15
Query: 475 cccccgtactcttt 488
||||||||||||||
Sbjct: 14 cccccgtactcttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
