BAC Information

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BAC

Clone NameMSMg01-080O17
Chromosome6 (Build37)
Map Location 49,045,833 - 49,046,182
singlet/doubletsinglet
Overlap geneIgf2bp3
Upstream geneZfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011
Downstream geneLOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210, Npy, LOC100041653
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080O17.T7 (MSMg01no080_o17.b1)MSMg01-080O17.TJ (MSMg01no080_o17.g1)
ACCAG301642AG301643
length704703
length of high quality
(start - end)
370 (63 - 432)448 (68 - 515)
definitionCHROMAT_FILE: MSMg01no080_o17.b1 PHD_FILE: MSMg01no080_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:58 2005CHROMAT_FILE: MSMg01no080_o17.g1 PHD_FILE: MSMg01no080_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GAGATCCTACGCCCCATCTTTAAATTTCTTACTGTAAATAGCTCCTTCCA
TCTCTAGAGATGTGAACCTATAACATCTTCTTTAAAGCACAAATTTGTTT
TATTGCTTATTGGTGATTTACCTTTTTCCCACCATTGTATTTTTATTTCA
GAATTGTTGGTGGTGTCTATGTGTATGGGTGGTTTGCTTGCATGTATGTC
TGTGCAGCACATATGCACAGTGCTTACAGAGGTCAAAAGAAGAGGGTGGA
TCTCTTGGAACTGGTGTGGGTGCTAGGAGTTGAATCTGAGTTCTCTGGAA
GGGCAGTCAGTGCTCTTTAACAGCTGAGATATGACTCCAGCCCCCACTAT
ATATGTTTTTCACACAACAAACTTCTTACATGTAGCAGGTTCCAGAACAA
TAATTTATCCTAACTATAGGTGACACAAATGTTTAAATAGGAATAGAAAT
AGGTCCAATTATCTCAGCCACAAGGAGCAGGTTCCTTAAGCCTGAGCTTC
CTTCTCCATCTCAGTTGCTTGCACTCTTTTCTGACATCTTCATGGGCCAA
CATGACACCTGTGCCCCCCCCATCCCCGACTCTTTGGTGTCTGTCTTCAG
GCTTTATTGCTTGCGACAGAACTCTTGACCTCTTGCAAAGGAACTTTTAT
TGTT
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCAC
CTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAAC
AACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATT
CAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTC
CATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTG
GCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATAG
CTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACA
TGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAA
AGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACA
TTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAA
TTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAAC
ACATTCCCAAAGGAACTCACACAATATGTACTCCCTGATAAGTGGATATT
ATCCCACCACCTAGGACACCCCAGATACAAGATACAATTTCCCAAACCCC
TGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_o17.b1 MSMg01no080_o17.b1 CHROMAT_FILE:
MSMg01no080_o17.b1 PHD_FILE: MSMg01no080_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:58 2005
         (370 letters)



>mm_chr6_49045830_49046599
          Length = 770

 Score =  669 bits (346), Expect = 0.0
 Identities = 349/350 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccatctttaaatttcttactgtaaatagctccttccatctctagagatgtgaacctata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 cccatctttaaatttcttactgtaaatagctccttccatctctagagatgtgaacctata 294

                                                                       
Query: 61  acatcttctttaaagcacaaatttgttttattgcttattggtgatttacctttttcccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 acatcttctttaaagcacaaatttgttttattgcttattggtgatttacctttttcccac 234

                                                                       
Query: 121 cattgtatttttatttcagaattgttggtggtgtctatgtgtatgggtggtttgcttgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 cattgtatttttatttcagaattgttggtggtgtctatgtgtatgggtggtttgcttgca 174

                                                                       
Query: 181 tgtatgtctgtgcagcacatatgcacagtgcttacagaggtcaaaagaagagggtggatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 tgtatgtctgtgcagcacatatgcacagtgcttacagaggtcaaaagaagagggtggatc 114

                                                                       
Query: 241 tcttggaactggtgtgggtgctaggagttgaatctgagttctctggaagggcagtcagtg 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 113 tcttggaactggtgtgggtgctaggagttgaatctgagttctctggaagggcagccagtg 54

                                                             
Query: 301 ctctttaacagctgagatatgactccagcccccactatatatgtttttca 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53  ctctttaacagctgagatatgactccagcccccactatatatgtttttca 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)