BAC Information

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BAC

Clone NameMSMg01-081G06
Chromosome6 (Build37)
Map Location 53,721,266 - 53,890,995
singlet/doubletdoublet
Overlap geneLOC384386, 1200009O22Rik, Cpvl
Upstream geneJazf1, LOC666259, LOC666516, D430007I03, Creb5
Downstream geneLOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik, Znrf2, Nod1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081G06.T7 (MSMg01no081_g06.b1)MSMg01-081G06.TJ (MSMg01no081_g06.g1)
ACCAG302004AG302005
length672666
length of high quality
(start - end)
458 (49 - 506)452 (76 - 527)
definitionCHROMAT_FILE: MSMg01no081_g06.b1 PHD_FILE: MSMg01no081_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:34 2005CHROMAT_FILE: MSMg01no081_g06.g1 PHD_FILE: MSMg01no081_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,890,556 - 53,890,995)(53,721,266 - 53,721,717)
sequence
NTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTCTTACAGCATCTTGCCAGATGAGTGACTGGGACAATGAGG
TGATGCCCTGAGCAGGGTGGGGTGCTCAGCATGATCTTTCGGGGGCTCAA
CCCCTGAGGTTGCAAATCTCCTGACCTTTTCTGCCAGGCAGAGCTGAGGA
CTATGTCCAACTATGCGTGAAGAAACTATGAGTGAAGAAACTATGTCCAG
GGCAGCTGTCTGTTTTTGAAAAGCCATTGTTATTGTCATTAATAAAGCTA
TGGTTTTATCACAAAATTTATACCCAGAAGCAAGGCCAGCAAGTGAGTAT
AGCTGCATTTTTTTTTAAAACGCTATACTTAAGAAATATGGGTAAATGTT
ACTTAAAAATTATAACCTGTGGATACACATACATTTATGTAGACACATTG
CTTTCCAACATAATGTTATTATCTGCCTCACCCCCACTTTGAAGGAGCTG
AATGAAGCTTGGTTTTTAGGTTTGAAATCTTCCCCCCTTCCTAGTACCTG
ACAAACTGGTACCAGATAAATCACTGTTTGAACGCTGCTGAAACACGGAA
TAAGGTAGAGATCCTGAGGACCACATAGCGTACGCCGCATTCTCCTTGTA
TATTTACCCCCCTGGCCATTTC
NCACATTGCTAGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTCTTACACCCAACCAAAATGTAT
ATGTGTGTGTTTACATGAAACCTGGGCAAGGAGCGGTCAGAGTGCTCATA
TGAGGCCCAAACTGGAAACAACTAGATGTCCATCCATCATAACTATTGAT
GTGCCATAAAGAGCAAGTGAAGTTTTGAGCAGGTGAAACTTAGAGATACT
GTGTATTGTTTGACATGAGCTGGCCATGCCAAGAACCAAGGACCTGGGCC
CATGGGAATTTGGCAAAGACTTTCCCCTCATGGGTCAGACTTGGAGTTGA
CAAAGCCTTCTTTCTTTGGTCCAAGTATGATTTAGTAATGACTGATCAGG
ATGTGCAAAACCTAGCAGCTGCAGCTCCCTCCTCTCGGATGTTTGAACCC
GAGACTGCTCACCTACAGAAACCTACTGAGACTAGCTAAAGTGCAGAAGT
TCTCAGTCACAGCAGTAATTGGTGAGGTTCCACCAGAGCATGCACAGTCC
ATCTGACCCCAGCTTTGTCTGTATCTGTGTCTGCATCTATCCTTCCTCCA
TTCCTTTACAGCCCCCATCAAGTTTCTGGATCTAAGCTGTGCCAGCCATG
CCAATGTACTGTGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_g06.b1 MSMg01no081_g06.b1 CHROMAT_FILE:
MSMg01no081_g06.b1 PHD_FILE: MSMg01no081_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:34 2005
         (458 letters)



>mm_chr6_53890338_53891195
          Length = 858

 Score =  820 bits (424), Expect = 0.0
 Identities = 436/440 (99%)
 Strand = Plus / Minus

                                                                       
Query: 19  gcatcttgccagatgagtgactgggacaatgaggtgatgccctgagcagggtggggtgct 78
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gcatcttgccagatgagtgactgggacaatgaggtgatgccctgagcagggtggggtgct 599

                                                                       
Query: 79  cagcatgatctttcgggggctcaacccctgaggttgcaaatctcctgaccttttctgcca 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 cagcatgatctttcgggggctcaacccctgaggttgcaaatctcctgaccttttctgcca 539

                                                                       
Query: 139 ggcagagctgaggactatgtccaactatgcgtgaagaaactatgagtgaagaaactatgt 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ggcagagctgaggactatgtccaactatgcgtgaagaaactatgagtgaagaaactatgt 479

                                                                       
Query: 199 ccagggcagctgtctgtttttgaaaagccattgttattgtcattaataaagctatggttt 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ccagggcagctgtctgtttttgaaaagccattgttattgtcattaataaagctatggttt 419

                                                                       
Query: 259 tatcacaaaatttatacccagaagcaaggccagcaagtgagtatagctgcattttttttt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tatcacaaaatttatacccagaagcaaggccagcaagtgagtatagctgcattttttttt 359

                                                                       
Query: 319 aaaacgctatacttaagaaatatgggtaaatgttacttaaaaattataacctgtggatac 378
           |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 358 aaaaagctatacttaagaaatatgggtaaatgttacttaaaaattataaactgtggatac 299

                                                                       
Query: 379 acatacatttatgtagacacattgctttccaacataatgttattatctgcctcaccccca 438
           |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 298 acatacatttatgtagacacattgttttccagcataatgttattatctgcctcaccccca 239

                               
Query: 439 ctttgaaggagctgaatgaa 458
           ||||||||||||||||||||
Sbjct: 238 ctttgaaggagctgaatgaa 219


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no081_g06.g1 MSMg01no081_g06.g1 CHROMAT_FILE:
MSMg01no081_g06.g1 PHD_FILE: MSMg01no081_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:34 2005
         (452 letters)



>mm_chr6_53721066_53721917
          Length = 852

 Score =  835 bits (432), Expect = 0.0
 Identities = 447/452 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtcttacacccaaccaaaatgtatatgtgtgtgtttacatgaaacctgggcaaggagcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtcttacacccaaccaaaatgtatatgtgtgtgtttacatgaaacctgggcaaggagcg 260

                                                                       
Query: 61  gtcagagtgctcatatgaggcccaaactggaaacaactagatgtccatccatcataacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcagagtgctcatatgaggcccaaactggaaacaactagatgtccatccatcataacta 320

                                                                       
Query: 121 ttgatgtgccataaagagcaagtgaagttttgagcaggtgaaacttagagatactgtgta 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcgatgtgccataaagagcaagtgaagttttgagcaggtgaaacttagagatactgtgta 380

                                                                       
Query: 181 ttgtttgacatgagctggccatgccaagaaccaaggacctgggcccatgggaatttggca 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 ttgtttgacatgagctggccatgccaagaaccaaggaactgggcccatgggaatttggca 440

                                                                       
Query: 241 aagactttcccctcatgggtcagacttggagttgacaaagccttctttctttggtccaag 300
           |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 aagacttttccctcatgggtcagacttggaattgacaaagccttctttctttggtccaag 500

                                                                       
Query: 301 tatgatttagtaatgactgatcaggatgtgcaaaacctagcagctgcagctccctcctct 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 tatgatttagtaatgactgatcaggatgtgcaaaaactagcagctgcagctccctcctct 560

                                                                       
Query: 361 cggatgtttgaacccgagactgctcacctacagaaacctactgagactagctaaagtgca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cggatgtttgaacccgagactgctcacctacagaaacctactgagactagctaaagtgca 620

                                           
Query: 421 gaagttctcagtcacagcagtaattggtgagg 452
           ||||||||||||||||||||||||||||||||
Sbjct: 621 gaagttctcagtcacagcagtaattggtgagg 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)