BAC Information

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BAC

Clone NameMSMg01-081K07
Chromosome6 (Build37)
Map Location 115,581,725 - 115,582,216
singlet/doubletsinglet
Overlap geneRaf1
Upstream geneAtg7, Vgll4, 1500001M20Rik, LOC100043420, Syn2, Timp4, Pparg, Tsen2, 2510049J12Rik, Mkrn2
Downstream geneLOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122, Rho, H1foo, Plxnd1, Tmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081K07.T7 (MSMg01no081_k07.b1)MSMg01-081K07.TJ (MSMg01no081_k07.g1)
ACCAG302198AG302199
length702699
length of high quality
(start - end)
513 (37 - 549)492 (68 - 559)
definitionCHROMAT_FILE: MSMg01no081_k07.b1 PHD_FILE: MSMg01no081_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:55 2005CHROMAT_FILE: MSMg01no081_k07.g1 PHD_FILE: MSMg01no081_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXCTATTCCAAGAGGATCCGCGGAATTCTC
CCAATACTCTTCACCTCATGCAGTGTCTGAAGCTCAGATATTTGGAGGCA
GCTTAGTTGAGGAGTTGGGACTGTAGTATCTAAAGGTCAGCTGGACCTTG
GGCTTTGCGTCCAAGATCACTCACTCCCATGACATTCTGGACTGACTTGT
GTCCACCTAAAGTTCCTGTGTTGAAATCCTGTCCCTCAGTGTGACTGCAT
GAGGATTAGGACCTTCAAGGAGGTGATCAAGGTTAACTGGGGTCAGAAAG
ATGTGCTCAATACATAAAGAATTTGTCCTTACCAAAGGAGTAGATGTCAG
AAGCATGCACCCAGAGAAAGGTCATGTGAGAATACAGCAAGAAGCCAACC
AGCCATCGTCAAGCCAAAGCCCTCCCAGAAACCAACCCTGCTGGCACCTT
GGTCTTGAACCCAGAAGGAAAAAAAAAAAAAGCAGTCTGTGTTGTTTATG
CCACCCAGGCTGTTATGTTCTGTGATGGCCTTCACAAACTGTAACACAGG
CTAATGGCAGAGGGTCACAGTTCCCCCTTATCCATTGCCTGAGTGTCCTG
GTTTGGCTGCTGGCCTCCCTCACATCTAAAACAGCACGGTAGGGCTGGCG
TGTAGCTCACCTGTACAATGCTTTCCCATTACACAGGAAATTCCTGGGTT
TG
ATGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTAGTACAAGGTGGCATTTCAGTGAGGGAACAG
CCAGGCCTGTTCAGGGTGGTGTGGGAATAGGCAGAACATTATCCCTTAGA
AAAGCTGGTCTTTATCCCTTGAATGTATATGAGTGTGACCTGAACAAACC
TTAAATTTCATCTACAGAACAAATATGCTCTCCGTTGGTTTTTGGAGTTG
GGGTGGAATCTAGGGCCTCACCTAGGCTATGCTGGTGACATGCCATGGAG
TCATACCTTTAGTCACAGGAGTTACTGGTTTCAGGATGTGGGGCTCATAC
CCAGGAGCTTATCCGGGCTGGGTAAACCTCCTGTCGCTGAGCTGCAGCTG
CCTCAGTCTATCCTTGATAATGTGTGTCCCTAGGCTGAAACAGTCTCCTC
ATAGGTCAGTGTCCCAGATGTTCTAACAGTAGAGCACATACTTTGCTGTG
TGCTGGCTACAGGGAAAGATTTTTAGTTTTTCTTTCAATTAAACTGGGTA
GATTCCAGTTAGGTGGTACTTATAGCAAATACTGATCTATTCTTAAAAAT
GTTGTAAAACTCTGAAGTATTCTGGACAGTGATTTATTACCGAGGAGAAA
ATGTGTAATGGACTCTCCTTTTCATAGGTATGTCAAGCACATCTGTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_k07.g1 MSMg01no081_k07.g1 CHROMAT_FILE:
MSMg01no081_k07.g1 PHD_FILE: MSMg01no081_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:55 2005
         (492 letters)



>mm_chr6_115581525_115582416
          Length = 892

 Score =  899 bits (465), Expect = 0.0
 Identities = 486/493 (98%), Gaps = 2/493 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagtacaaggtggcatttcagtgagggaacagccaggcctgttcagggtggtgtgggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ctagtacaaggtggcatttcagtgagggaacagccaggcctgttcagggtggtgtgggaa 633

                                                                       
Query: 61  taggcagaacattatcccttagaaaagctggtctttatcccttgaatgtatatgagtgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 taggcagaacattatcccttagaaaagctggtctttatcccttgaatgtatatgagtgtg 573

                                                                       
Query: 121 acctgaacaaaccttaaatttcatctacagaacaaatatgctctccgttggtttttggag 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 572 acctgaacaaaccttaaatttcatctacataacaaatatgctctccgttggtttttggag 513

                                                                       
Query: 181 ttggggtggaatctagggcctcacctaggctatgctggtgacatgccatggagtcatacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ttggggtggaatctagggcctcacctaggctatgctggtgacatgccatggagtcatacc 453

                                                                       
Query: 241 tttagtcacaggagttactggtttcaggatgtggggctcatacccaggagcttatccggg 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 452 tttagtcacaggagttactggtttcaggatgtggggctcagacccaggagcttatccggg 393

                                                                       
Query: 301 ctgggtaaacctcctgtcgctgagctgcagctgcctcagtctatccttgataatgtgtgt 360
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ctgggtaaacctcctgttgctgagctgcagctgcctcagtctatccttgataatgtgtgt 333

                                                                       
Query: 361 ccctaggctgaaacagtctcctcataggtcagtgtcccagatgttctaacagtagagcac 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 332 ccctaggctgaaacagtctcctcataggtcagtgtcccagatgttctaacagtagaacac 273

                                                                       
Query: 421 atactttgctgtgtgctggctacagggaaagatttttagtttttctttcaa-ttaaactg 479
           ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 272 atactttgctgtgtgctggctacagggaaagatttttagtttttctt-caaattaaactg 214

                        
Query: 480 ggtagattccagt 492
           || ||||||||||
Sbjct: 213 ggcagattccagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)