Query= MSMg01no081_o21.b1 MSMg01no081_o21.b1 CHROMAT_FILE:
MSMg01no081_o21.b1 PHD_FILE: MSMg01no081_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:17 2005
(484 letters)
>mm_chr6_92953560_92954443
Length = 884
Score = 870 bits (450), Expect = 0.0
Identities = 474/482 (98%)
Strand = Plus / Plus
Query: 3 gaattctacgatggttaccccagtgcccttggtagcaagggcattagtatctgataaggc 62
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctacgatggggacgccagtgcccttggtagcaagggcattagtatctgataaggc 262
Query: 63 ctcatcctttgttgagtagttagccagttaaccaatgtcaaaggtcatttggaagcctgg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctcatcctttgttgagtagttagccagttaaccaatgtcaaaggtcatttggaagcctgg 322
Query: 123 ccaggatccctggagaatttaagaaccattctggcaacattagatagagtcttctggcaa 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ccaggatccctggagaatttaagaaccattctggcaacattagatagagtcttctggcaa 382
Query: 183 gataatttctaatgggattaggaagatagcttaatcggtaaagcgctcgctttatgagca 242
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gatagtttctaatgggattaggaagatagcttaatcggtaaagcgctcgctttatgagca 442
Query: 243 taaagactccagttcaagttcaggaagcagtggatagtctatcagagccacactcatttg 302
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 443 taaagactccagttcaagttcaggaagcagtggaaagtctagcagagccacactcatttg 502
Query: 303 tgatcgcagtggtagagaggtagagacacaaggattcccagagttcactgggtttccagc 362
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgatcgcagtggtggagaggtagagacacaaggattcccagagttcactgggtttccagc 562
Query: 363 ctccctacattgtgagttccaggccatcgagagagagcatctcaagacacaagctggata 422
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 563 ctccctacattgtgagttccaggccagcgagagagagcatctcaagacacaagctggata 622
Query: 423 gcacctgagcaacaatatctgaatctgactgttagctttgacatgtgcacacacccatac 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gcacctgagcaacaatatctgaatctgactgttagctttgacatgtgcacacacccatac 682
Query: 483 ac 484
||
Sbjct: 683 ac 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no081_o21.g1 MSMg01no081_o21.g1 CHROMAT_FILE:
MSMg01no081_o21.g1 PHD_FILE: MSMg01no081_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:17 2005
(457 letters)
>mm_chr6_93129019_93129873
Length = 855
Score = 785 bits (406), Expect = 0.0
Identities = 439/450 (97%), Gaps = 2/450 (0%)
Strand = Plus / Minus
Query: 7 aagaaaacttaaacatatccagtttttgtggtaactttatcctttgcattacattagctg 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 aagaaaacttaaacatatccagtttttgtggtaactttatcctttgcattacattagctg 796
Query: 67 tacacataatagagcaggtgcttccaccaagtctgagcgagcgccttggctttctcactg 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 tacacataatagagcaggtgcttccaccaagtctgagcgagcgccttggctttctcactg 736
Query: 127 actattcttaccgtcctaagagtcaagtcacaggccttgcacatactggagatgtactct 186
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 735 actattcttaccgtcctaagagtcaagtcacagaccttgcacatactggagatgtactct 676
Query: 187 accactgaactaccccagcccttctggggatagattctgatggctcttctgattcaacag 246
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 675 accactgaactatcccagcccttctggg-atagattctgatggctcttctgattcaacag 617
Query: 247 gtcatatacagattccagacacatctacatgtgtaacaaactctcagtggagctcctaac 306
|||| | ||||||||||||||||||| ||||||||||||||||||||||||| || |||
Sbjct: 616 gtcagaaacagattccagacacatctgcatgtgtaacaaactctcagtggagttcttaag 557
Query: 307 ttcctgacatcacagaatctcaagtgcatacataagctatacaattttttttccaacatc 366
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 556 ttcctgacatcacagaatctcaagtgcatacataagctatacaattttttt-ccaacatc 498
Query: 367 taagttctgcaagctaatgttccctagtgtacatgccataaactattcagccagaaatag 426
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gaagttctgcaagctaatgttccctagtgtacatgccataaactattcagccagaaatag 438
Query: 427 gatcaactatcgtaacctttggaaagctaa 456
||||||||||||||||||||||||||||||
Sbjct: 437 gatcaactatcgtaacctttggaaagctaa 408
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 855
Length adjustment: 10
Effective length of query: 447
Effective length of database: 845
Effective search space: 377715
Effective search space used: 377715
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
