BAC Information

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BAC

Clone NameMSMg01-082A12
Chromosome6 (Build37)
Map Location 28,036,341 - 28,036,787
singlet/doubletsinglet
Overlap geneGrm8
Upstream geneLOC100041247
Downstream gene6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350, Snd1, Lrrc4, LOC100041367, Lep
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082A12.T7 (MSMg01no082_a12.b1)MSMg01-082A12.TJ (MSMg01no082_a12.g1)
ACCAG302495AG302496
length700699
length of high quality
(start - end)
273 (43 - 315)447 (69 - 515)
definitionCHROMAT_FILE: MSMg01no082_a12.b1 PHD_FILE: MSMg01no082_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:25 2005CHROMAT_FILE: MSMg01no082_a12.g1 PHD_FILE: MSMg01no082_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGA
ATTCTATCCCATCCGGTTCCTGTTAGACCTTCTGTGTTTGCATTCCTCTG
TTTTATGTAAGAATCCAGCAACCTCTTTGTACCTTGCTGGTGTGTCACCC
AACTTTGCTATTTTCTTCTGTATAAAAAGTTTGATGCTCAATTTGACAAA
TTACATTCAGATTCTACACAACCTCTCCTGTGTGCATCTGTCTGTCATCT
CATCCAACGTTTTGCCCACCTGCGACTAGAGACCCATTCCACGCATACAA
AGGGGTCCAGAAGGTCTGCTTTACAGGCTGACCTTGAACTCAGAAATCCA
CCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCGCCACTGC
CCGGCTTCCTTTGCCGTTAAAGACACAATGAATATAACAGTCAGTTTGCG
CTTCTGCTGGACTGAGTACTTTTCACTGGGAGATACCCAAAGCTCCTTCT
CATCCTTCTTATATGCTGACAGTGTAGATTTAGCCATCTATTATAGTCAC
TACTTAAGAACAGAATAAATGAAGACAGTCTTTCCTTTCTGCTTAGAAAA
TTCTGTCTCTATAAAGATAGGTATTTGTGAACAAGATTGGCTCTGTTGTA
GTGGTCGTGCAATCCATAAAAGCGTAGGATGGAACATCTATAAAATAGAA

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGTGGACTTGGAGTTTTAGATACTTGTGATCC
ACCATACAGATGTTGGGAACTGAACCCGAGTCCTCTGCAAGGATAGCAAC
TGTTCTTAACTGCTGAGCCATCTCTTCAGCCCTGATATTAAATGTATTTT
TGATTTACAGCATTTTCACCTTATGAGGTTACAACTCAGAAGTTAAGGGG
CGACATTAATTCCTCCCCTTTTATTGAAAGAGAAGTGGGAGAAATGATAT
AATTAGGTCTTAATGAAAATAAAAATGTATTAAAAGGAGATTTGCATATT
TGAAAAGGATGCAAAAATGTCACCTTGACTTGAAAACAAAGCTTATTATG
AGGTATAAGTACTGCACTGATGTAAGGAGAAGATAAAGCTGCTGTTACTC
CTATATAGAAGCTCCCACTTTGCTGGATTTTTTTTTTAAATCCATCAAAG
AAGATGGAATTAGCTCAGAGCTGGGGAAAAGCTTCCAGCTTTCAGTTGAT
CAGTCCCATCTACTGGATAATCATGTAGAGCAGAAACGGAGTGGGCGTTT
TTTGGAGCGTGTGTGTGTGTGCGTGTGTGTGTGTGTGATATCATCCTCTA
TCTTTCTCATTCCCCCTTTTATCCACCCCTCTTTCTCCCCCCTCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_a12.g1 MSMg01no082_a12.g1 CHROMAT_FILE:
MSMg01no082_a12.g1 PHD_FILE: MSMg01no082_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:25 2005
         (447 letters)



>mm_chr6_28036027_28036873
          Length = 847

 Score =  804 bits (416), Expect = 0.0
 Identities = 440/448 (98%), Gaps = 2/448 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtggacttggagttttagatacttgtgatccaccatacagatgttgggaactgaacccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 tgtggacttggagttttagatacttgtgatccaccatacagatgttgggaactgaacccg 702

                                                                       
Query: 61  agtcctctgcaaggatagcaactgttcttaactgctgagccatctcttcagccctgatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 agtcctctgcaaggatagcaactgttcttaactgctgagccatctcttcagccctgatat 642

                                                                       
Query: 121 taaatgtatttttgatttacagcattttcaccttatgaggttacaactcagaagttaagg 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 taaatatatttttgatttacagcattttcaccttatgaggttacaactcagaagttaagg 582

                                                                       
Query: 181 ggcgacattaattcctccccttttattgaaagagaagtgggagaaatgatataattaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ggcgacattaattcctccccttttattgaaagagaagtgggagaaatgatataattaggt 522

                                                                       
Query: 241 cttaatgaaaataaaaatgtattaaaaggagatttgcatatttgaaaaggatgcaaaaat 300
            ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tttaattaaaataaaaatgtattaaaaggagatttgcatatttgaaaaggatgcaaaaat 462

                                                                       
Query: 301 gtcaccttgacttgaaaacaaagcttattatgaggtataagtactgcactgatgtaagga 360
           |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 461 gtcaccttaacttgaaaacaaagcttattatgaggtataagtactgtactgatgtaagga 402

                                                                       
Query: 361 gaagataaag-ctgctgttactcctatatagaagctcccactttgctggatttttttttt 419
           |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 401 gaagat-aagtctgctgttactcctatatagaagctcccactttgctggattttttttta 343

                                       
Query: 420 aaatccatcaaagaagatggaattagct 447
           ||||||||||||||||||||||||||||
Sbjct: 342 aaatccatcaaagaagatggaattagct 315


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)