Query= MSMg01no082_f01.b1 MSMg01no082_f01.b1 CHROMAT_FILE:
MSMg01no082_f01.b1 PHD_FILE: MSMg01no082_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:45 2005
(643 letters)
>mm_chr6_4117116_4118152
Length = 1037
Score = 1096 bits (567), Expect = 0.0
Identities = 610/637 (95%), Gaps = 23/637 (3%)
Strand = Plus / Minus
Query: 24 aattttctagtaactttggtaaaatcagagactagactactcaatggctccatttgaaag 83
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1029 aattttctagtaactttggtaaaatcagagactagactactcaatggctccatttggaag 970
Query: 84 ggagaatttgacctttaaataacagcatctactacagtccagcctttgtgctactcacct 143
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 969 ggagaatttgacctttaaataacagcatctactacagtccaacctttgtgctactcacct 910
Query: 144 atttatataaaaactgcccct---cccccca--------------acacacacacacaca 186
||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 909 atttatataaaaactgcccctcccccccccaacacacacacacacacacacacacacaca 850
Query: 187 cacacacacacaatggctcctctaggactctggttaatcccctttgctacaggaatttac 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 849 cacacacacacaatggctcctctaggactctggttaatcccctttgctacaggaa-ttac 791
Query: 247 aagaggattactgacataaagtactagcctcattactgatgttaacttaaggaaaacaat 306
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 790 aagaggattactgacataaagtactagcctcattactgatg-----ttaaggaaaacaat 736
Query: 307 tgatatttcctttgtatctccataaattcacttccccacccctgtcatgcttgttctata 366
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 735 tgatatttcctttgtatctccataaattcacttccccacccctgccatgcttgttctata 676
Query: 367 tggctgagttatggaagctacaatctttcaccataatagatctgagtttctggtcatgat 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tggctgagttatggaagctacaatctttcaccataatagatctgagtttctggtcatgat 616
Query: 427 atctttccagattatccttttgtactcatgcactaactatcaaaattgcaaggaattaca 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 atctttccagattatccttttgtactcatgcactaactatcaaaattgcaaggaattaca 556
Query: 487 aggaatgggccggggatcacttccctgtaggccttcatgttcctgtttgctaggcttttg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aggaatgggccggggatcacttccctgtaggccttcatgttcctgtttgctaggcttttg 496
Query: 547 ttatactttggtttgtgacaggactcctttgcatttctggtagacatattaattatatag 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttatactttggtttgtgacaggactcctttgcatttctggtagacatattaattatatag 436
Query: 607 aatctcacacctataaccaaaacagataataccgaga 643
|||||||||||||||||||||||||||||||| ||||
Sbjct: 435 aatctcacacctataaccaaaacagataatacagaga 399
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1037
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1027
Effective search space: 650091
Effective search space used: 650091
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no082_f01.g1 MSMg01no082_f01.g1 CHROMAT_FILE:
MSMg01no082_f01.g1 PHD_FILE: MSMg01no082_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:45 2005
(595 letters)
>mm_chr6_4006106_4007100
Length = 995
Score = 1143 bits (591), Expect = 0.0
Identities = 594/595 (99%)
Strand = Plus / Plus
Query: 1 ataatcaaccagttatacaaaaattgtgttgaccaagggtgctatattaaacagaagtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataatcaaccagttatacaaaaattgtgttgaccaagggtgctatattaaacagaagtaa 260
Query: 61 gattttgtataatgtagcatttatgagagaaaagcagccagagttgagaaagaacactca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 gattttgtataatgtagcatttatgagagaaaagcagccagagttgagaaagaacaccca 320
Query: 121 caaagacctctgaatgataggaagaaagaagtaaatactattcagagagcaggctgctcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaagacctctgaatgataggaagaaagaagtaaatactattcagagagcaggctgctcc 380
Query: 181 ttaaaaatgcattcaccaggcaccctgaggcatcccataattacctcctcctggacaagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaaaaatgcattcaccaggcaccctgaggcatcccataattacctcctcctggacaagg 440
Query: 241 tgtggatgtacagagaagctaatgaatgcagaaacaaattgaacctctttgcttggcaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtggatgtacagagaagctaatgaatgcagaaacaaattgaacctctttgcttggcaaa 500
Query: 301 ctttgttccacctctgttagctctggaggaaaataaacacagcttttaaaccttttacat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttgttccacctctgttagctctggaggaaaataaacacagcttttaaaccttttacat 560
Query: 361 gattagacttcaaaacaattttagaatgtattattttcttaactgaaccctgagtttttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gattagacttcaaaacaattttagaatgtattattttcttaactgaaccctgagtttttg 620
Query: 421 tagcacacatttgtaatatagtcataatcctcactattatattattctaaatattaaaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagcacacatttgtaatatagtcataatcctcactattatattattctaaatattaaaaa 680
Query: 481 tatgtgtgacctcatgagacagttcacatgtcctacttacttgaaagcctaacagctaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatgtgtgacctcatgagacagttcacatgtcctacttacttgaaagcctaacagctaga 740
Query: 541 gtatatactttaaatactatttgtacatgaaatgaatgaatgatataaagaacat 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtatatactttaaatactatttgtacatgaaatgaatgaatgatataaagaacat 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
