BAC Information

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BAC

Clone NameMSMg01-082N19
Chromosome6 (Build37)
Map Location 82,451,110 - 82,451,346
singlet/doubletsinglet
Overlap geneTacr1
Upstream geneLOC232143, 1700009C05Rik, AW146020, Mrpl19, Tmem166, EG622198
Downstream genePole4, LOC100043412, Hk2, EG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082N19.T7 (MSMg01no082_n19.b1)MSMg01-082N19.TJ (MSMg01no082_n19.g1)
ACCAG303130AG303131
length692761
length of high quality
(start - end)
614 (42 - 655)240 (64 - 303)
definitionCHROMAT_FILE: MSMg01no082_n19.b1 PHD_FILE: MSMg01no082_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:26 2005CHROMAT_FILE: MSMg01no082_n19.g1 PHD_FILE: MSMg01no082_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTGATCTTTCCAGAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAA
TGCTTTTTCTGCATCCAACGAGATGATCATGTGGTTTTTGTCTTTGAGTT
TGTTTATATAGTGGATTACATTGATGGATTTTCGTATATTAAACCATCCC
TGCATTCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAAT
GTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATCGA
TATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGATCTTTC
TGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGGGTAG
AGTACTTTCTACTTCTATCTTGTGAAAAAGTTTGTGCAGAACTGGAATTA
GATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCGTCTGGTCCT
GGGCTTTTTTTGGCTGGGAGACTATTTATAACTGCTTCTATTTCTTTAGG
GGATATGGGACTGTTTAGAAGGTCAACTTGATCCTGATTCAACTTTGGTA
CCTCGTATCTGTCCAGATATTTGTCCATTTCGTCCAGGTTTTCCAGTTTT
GTTGAGTATAGCCTTTTGCAGAAGGATCTGATGGTGTTTTGC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTGACACTACAGGAGAAACAGTAGCATGGAATCCAA
GACTAATGGGACACAGGTAGTGTGAGGGGGAAAAGAGAACAATGGGGCCA
GGGCTCACTGGGAAGCAGGATGAGGGAGCAGAACAGAGGAGAAAATGCAA
AGGGGATAACTGACACTAAGAATGCTTAAAAATGCCACATGGAAACTTGG
TATTTTATAAGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
CGNCCCTCTTTTTTTTTTTTTCCCCCCCCTCTTTCTTCTTTCTTCCCTTA
TTTTTTTTTCCCCCCCCCCCCCCCTAACTTTCCTCTTCCCCTTTTTCTTT
TTTCTGCCCCCCCCTTTCTTTATATCCCCTCCCCCCCTGTGGTGTACCTA
CCCTTCGTTTGTTTCTCTTTTTTCTTTTCCCTCAATCTACCTTCTCTTTA
TCTCGCATCCTTCACGTTCACCGCCTCTATTCTTTTTACGGCGCTTTCAC
CGGTTTCTTCTTTACCCGCTATATTATCTTTTTTTCTTCATTGACCTTCT
CGTTTTCGTCCCTTCGTCTTTTTTCTCCCCTTCCCTTACTCCCTTTTCTC
CCATACAATTCTCCCTCCCTATCTGTGCCCCAACACACTTTTTTTTTCCG
CTCCCTGTTATTCGCGCCCTTTAATCTTCTTTTTCCCCCTCTTTCCCCTC
TTGTTTTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_n19.g1 MSMg01no082_n19.g1 CHROMAT_FILE:
MSMg01no082_n19.g1 PHD_FILE: MSMg01no082_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:26 2005
         (240 letters)



>mm_chr6_82450910_82451549
          Length = 640

 Score =  451 bits (233), Expect = e-131
 Identities = 236/237 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgacactacaggagaaacagtagcatggaatccaagactaatgggacacaggtagtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgacactacaggagaaacagtagcatggaatccaagactaatgggacacaggtagtgt 260

                                                                       
Query: 61  gagggggaaaagagaacaatggggccagggctcactgggaagcaggatgagggagcagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagggggaaaagagaacaatggggccagggctcactgggaagcaggatgagggagcagaa 320

                                                                       
Query: 121 cagaggagaaaatgcaaaggggataactgacactaagaatgcttaaaaatgccacatgga 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 cagaggagaaaatgcaaaggggataactgacactaagactgcttaaaaatgccacatgga 380

                                                                    
Query: 181 aacttggtattttataagatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacttggtattttataagatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)