BAC Information

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BAC

Clone NameMSMg01-082N23
Chromosome6 (Build37)
Map Location 66,494,509 - 66,495,144
singlet/doubletsinglet
Overlap genenone
Upstream gene9030611K07Rik, A930038C07Rik, LOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1, LOC100041916, Tpm3-rs3, LOC627751, Mad2l1
Downstream geneV1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082N23.T7 (MSMg01no082_n23.b1)MSMg01-082N23.TJ (MSMg01no082_n23.g1)
ACCAG303138AG303139
length708708
length of high quality
(start - end)		638 (38 - 675)527 (66 - 592)
definitionCHROMAT_FILE: MSMg01no082_n23.b1 PHD_FILE: MSMg01no082_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:27 2005CHROMAT_FILE: MSMg01no082_n23.g1 PHD_FILE: MSMg01no082_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCT
TTTGAATGCGCAATTTCTACCCTGTGTGGGTTTAAGTCATGCTTTATCTG
TTTGTCAATCTGGATGTTTGGTATGTTTTCATGTTTCAGCTAGTGTGAAT
ATTGCAGTCATGACTGCATAACATATATTTAAGTCCATGCTTTTAATTAT
TTGGGGGGGATATAACCAAATACACTGCAGGATTGTATAAAAATGCTGTT
TTTCAATTTTTTGAGGAACCAACATTCTATTTTCTACAATGGCTGTTGAG
GACAGTCATATCTCACAACATAGCCAATTTATATGTAAATTCTAGTTTCT
TTTTATCTGTTCAATACATTACTGCTGGTAAAGATTTTAAGGCCTCTCAC
TGGTATTATTCTTCAAAGCCCTTCTAGTTTTCAGTTGTAGCACACGTCCT
AATGGTCAGTAAATGTTTATGGTTCCTATGTCTCCTTTCTGTACTGACCC
TGTAAAATATACCCTTTGTGTTTTGTCTTTCTGATTGAAAGTCTTTTGCC
TTTGGTTGATTCAACCATCTTTGCTCTCTACCTGAAATGTTTTCATCCTT
GCCGGTTTTTGCCTGTGTATTTTCATTCAAAAGTTCAGCTGGTGTGGTAT
TTCTTTACCCCGACATGACATTGGAGAGAAATTCAGCATTAGCTATTACA
TAAACTGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCACTGTGTAAATGAACTGCATTTTTCCTGTCCATT
TTTCTTTCCTGGACATCTGGGTTGTTTCTGGCTTGTTTCTGGCTTCTGGC
TATCTCAAACAAGCCTGTTATGAACACAATGGAACACGTGCCCCTGTGGC
ATGGTGGGGCATCATTTGGTTTATTCCCAAGAATGGTATTGCTGTGTCTT
CAGGTAGATCTATATCTAATTTTCTGAGGAACCTCTAAACTGACTTCCTG
AGTGGTTGTACCAGTTTGCAATCCCACCAGCAATTGAGGAGCATTCTTCT
TTATCCACATCCTCACCAACATGTGTTGTCACTTGAGGTTTTGATCTTAA
CTATTTTGATTTCTGTAAGGTGGAATCTCAGGGTAATTTTGTTTTGCAAT
TCTCTGAACACTAAGGACTTTGAATATTCCTTTGGGTGCTTCTCAGCCAT
TCAAGATTCCTCTGTTTGAATTCTGGGTTTAGTTCTATACCCCATTTTTG
ATTGGGTTGTTTGGTTGTTTTTGATGGTTAGCTTTTTGGTTTCTTTATAT
ATTTTGGATATTAGCCCTCTATAGAATGTGGAGTTAGTGAAGATTTTTTT
CCCCAATTTTGAAAGTGCCGATTTGTCCTTTTCGATTATGTCCCTTTTTC
TAACACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_n23.b1 MSMg01no082_n23.b1 CHROMAT_FILE:
MSMg01no082_n23.b1 PHD_FILE: MSMg01no082_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:27 2005
         (638 letters)



>mm_chr6_66494307_66495344
          Length = 1038

 Score = 1172 bits (606), Expect = 0.0
 Identities = 628/636 (98%), Gaps = 2/636 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccttttgaatgcgcaatttctaccctgtgtgggtttaagtcatgctttatctgt 64
           ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcccttttgaatgagcaatttttaccctgtgtgggtttaagtcatgctttatctgt 262

                                                                       
Query: 65  ttgtcaatctggatgtttggtatgttttcatgtttcagctagtgtgaatattgcagtcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttgtcaatctggatgtttggtatgttttcatgtttcagctagtgtgaatattgcagtcat 322

                                                                       
Query: 125 gactgcataacatatatttaagtccatgcttttaattatttggggggg--atataaccaa 182
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 323 gactgcataacatatatttaagtccatgcttttaattatttgggggggggatataaccaa 382

                                                                       
Query: 183 atacactgcaggattgtataaaaatgctgtttttcaattttttgaggaaccaacattcta 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atacactgcaggattgtataaaaatgctgtttttcaattttttgaggaaccaacattcta 442

                                                                       
Query: 243 ttttctacaatggctgttgaggacagtcatatctcacaacatagccaatttatatgtaaa 302
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 443 ttttctacaatggctgttgaggacagtcatgtctcacaacatagccaatttatatgtaaa 502

                                                                       
Query: 303 ttctagtttctttttatctgttcaatacattactgctggtaaagattttaaggcctctca 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 503 ttctagtttctttttatctgttcaatacattactgctggtaaagattttaaagcctctca 562

                                                                       
Query: 363 ctggtattattcttcaaagcccttctagttttcagttgtagcacacgtcctaatggtcag 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctggtattattcttcaaagcccttctagttttcagttgtagcacacgtcctaatggtcag 622

                                                                       
Query: 423 taaatgtttatggttcctatgtctcctttctgtactgaccctgtaaaatataccctttgt 482
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 623 taaatgtttatggttcctatgtctcctttatgtactgaccctgtaaaatataccctttgt 682

                                                                       
Query: 483 gttttgtctttctgattgaaagtcttttgcctttggttgattcaaccatctttgctctct 542
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gttttgtctttctaattgaaagtcttttgcctttggttgattcaaccatctttgctctct 742

                                                                       
Query: 543 acctgaaatgttttcatccttgccggtttttgcctgtgtattttcattcaaaagttcagc 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 acctgaaatgttttcatccttgccggtttttgcctgtgtattttcattcaaaagttcagc 802

                                               
Query: 603 tggtgtggtatttctttaccccgacatgacattgga 638
           ||||||||||||||||||||||||||||||||||||
Sbjct: 803 tggtgtggtatttctttaccccgacatgacattgga 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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