BAC Information

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BAC

Clone NameMSMg01-082O18
Chromosome6 (Build37)
Map Location 53,721,266 - 53,891,010
singlet/doubletdoublet
Overlap geneLOC384386, 1200009O22Rik, Cpvl
Upstream geneJazf1, LOC666259, LOC666516, D430007I03, Creb5
Downstream geneLOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik, Znrf2, Nod1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082O18.T7 (MSMg01no082_o18.b1)MSMg01-082O18.TJ (MSMg01no082_o18.g1)
ACCAG303176AG303177
length726721
length of high quality
(start - end)
376 (40 - 415)567 (64 - 630)
definitionCHROMAT_FILE: MSMg01no082_o18.b1 PHD_FILE: MSMg01no082_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:31 2005CHROMAT_FILE: MSMg01no082_o18.g1 PHD_FILE: MSMg01no082_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,890,638 - 53,891,010)(53,721,266 - 53,721,832)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
CAAAGAGGCCTCTTGCCAGATGAGTGACTGGGACAATGAGGTGATGCCCT
GAGCAGGGTGGGGTGCTCAGCATGATCTTTCGGGGGCTCAACCCCTGAGG
TTGCAAATCTCCTGACCTTTTCTGCCAGGCAGAGCTGAGGACTATGTCCA
ACTATGCGTGAAGAAACTATGAGTGAAGAAACTATGTCCAGGGCAGCTGT
CTGTTTTTGAAAAGCCATTGTTATTGTCATTAATAAAGCTATGGTTTTAT
CACAAAATTTATACCCAGAAGCAAGGCCAGCAAGTGAGTATAGCTGCATT
TTTTTTTAAAAAGCTATACTTAAGAGATATGGGTAAATGTTACTTAAAAA
TTATAAACTGTGGATACACATACATTTATGTAGACACATTGTTTTCCAAC
ATAATGTTATTATCTGCCTCACCCCCACTTTTGAGGAGCTGATTGAAGCT
TGCTTTTTAGGTCTGAAATCTTCCCCCCCTTCCAGTACCTGAAAAACAGG
AACCAGATAAATCACCGTGGAACGCTGTTTGAACATGGAAGAAGGGGAGA
GATCCCAGAGGACCCCTAATGGCCGTTGAATCTCCGTGGACATTTTACCC
CCTGGGATAATTAGGTGAGGACCCCCATCCTTCTGCAAAACTGGTTTCCT
GGAAATGGTTTCCCAGTACCATTGGN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAGTCTTACACCCAACCAAAATGTATATGTGTGTGTTT
ACATGAAACCTGGGCAAGGAGCGGTCAGAGTGCTCATATGAGGCCCAAAC
TGGAAACAACTAGATGTCCATCCATCATAACTATTGATGTGCCATAAAGA
GCAAGTGAAGTTTTGAGCAGGTGAAACTTAGAGATACTGTGTATTGTTTG
ACATGAGCTGGCCATGCCAAGAACCAAGGACCTGGGCCCATGGGAATTTG
GCAAAGACTTTCCCCTCATGGGTCAGACTTGGAGTTGACAAAGCCTTCTT
TCTTTGGTCCAAGTATGATTTAGTAATGACTGATCAGGATGTGCAAAACC
TAGCAGCTGCAGCTCCCTCCTCTCGGATGTTTGAACCCGAGACTGCTCAC
CTACAGAAACCTACTGAGACTAGCTAAAGTGCAGAAGTTCTCAGTCACAG
CAGTAATTGGCGAGGTTCCACCAGAGTATGCACAGCCCACCTGACCCCAG
CTTTGTCTGTATCTGTGTCTGCATCTATCCTTCCTCCATTCCTTTACAGC
CCCCATCAAGTTTCTGGATCTAAGCTGTGCAAGCCATGGCAATGTACTGT
GGTACATTCAGTGAAATGAGTTTCCATTCATAAAGAATATGGTGTGCTAT
TTATCCACAGAAGCACATGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_o18.b1 MSMg01no082_o18.b1 CHROMAT_FILE:
MSMg01no082_o18.b1 PHD_FILE: MSMg01no082_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:31 2005
         (376 letters)



>mm_chr6_53890435_53891210
          Length = 776

 Score =  706 bits (365), Expect = 0.0
 Identities = 371/373 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcttcaaagaggcctcttgccagatgagtgactgggacaatgaggtgatgccctga 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gaattcttcaaagaggcatcttgccagatgagtgactgggacaatgaggtgatgccctga 517

                                                                       
Query: 64  gcagggtggggtgctcagcatgatctttcgggggctcaacccctgaggttgcaaatctcc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gcagggtggggtgctcagcatgatctttcgggggctcaacccctgaggttgcaaatctcc 457

                                                                       
Query: 124 tgaccttttctgccaggcagagctgaggactatgtccaactatgcgtgaagaaactatga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tgaccttttctgccaggcagagctgaggactatgtccaactatgcgtgaagaaactatga 397

                                                                       
Query: 184 gtgaagaaactatgtccagggcagctgtctgtttttgaaaagccattgttattgtcatta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gtgaagaaactatgtccagggcagctgtctgtttttgaaaagccattgttattgtcatta 337

                                                                       
Query: 244 ataaagctatggttttatcacaaaatttatacccagaagcaaggccagcaagtgagtata 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ataaagctatggttttatcacaaaatttatacccagaagcaaggccagcaagtgagtata 277

                                                                       
Query: 304 gctgcatttttttttaaaaagctatacttaagagatatgggtaaatgttacttaaaaatt 363
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 276 gctgcatttttttttaaaaagctatacttaagaaatatgggtaaatgttacttaaaaatt 217

                        
Query: 364 ataaactgtggat 376
           |||||||||||||
Sbjct: 216 ataaactgtggat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no082_o18.g1 MSMg01no082_o18.g1 CHROMAT_FILE:
MSMg01no082_o18.g1 PHD_FILE: MSMg01no082_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:31 2005
         (567 letters)



>mm_chr6_53721066_53722032
          Length = 967

 Score = 1042 bits (539), Expect = 0.0
 Identities = 560/567 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtcttacacccaaccaaaatgtatatgtgtgtgtttacatgaaacctgggcaaggagcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtcttacacccaaccaaaatgtatatgtgtgtgtttacatgaaacctgggcaaggagcg 260

                                                                       
Query: 61  gtcagagtgctcatatgaggcccaaactggaaacaactagatgtccatccatcataacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcagagtgctcatatgaggcccaaactggaaacaactagatgtccatccatcataacta 320

                                                                       
Query: 121 ttgatgtgccataaagagcaagtgaagttttgagcaggtgaaacttagagatactgtgta 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcgatgtgccataaagagcaagtgaagttttgagcaggtgaaacttagagatactgtgta 380

                                                                       
Query: 181 ttgtttgacatgagctggccatgccaagaaccaaggacctgggcccatgggaatttggca 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 ttgtttgacatgagctggccatgccaagaaccaaggaactgggcccatgggaatttggca 440

                                                                       
Query: 241 aagactttcccctcatgggtcagacttggagttgacaaagccttctttctttggtccaag 300
           |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 aagacttttccctcatgggtcagacttggaattgacaaagccttctttctttggtccaag 500

                                                                       
Query: 301 tatgatttagtaatgactgatcaggatgtgcaaaacctagcagctgcagctccctcctct 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 tatgatttagtaatgactgatcaggatgtgcaaaaactagcagctgcagctccctcctct 560

                                                                       
Query: 361 cggatgtttgaacccgagactgctcacctacagaaacctactgagactagctaaagtgca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cggatgtttgaacccgagactgctcacctacagaaacctactgagactagctaaagtgca 620

                                                                       
Query: 421 gaagttctcagtcacagcagtaattggcgaggttccaccagagtatgcacagcccacctg 480
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 gaagttctcagtcacagcagtaattggtgaggttccaccagagtatgcacagcccacctg 680

                                                                       
Query: 481 accccagctttgtctgtatctgtgtctgcatctatccttcctccattcctttacagcccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 accccagctttgtctgtatctgtgtctgcatctatccttcctccattcctttacagcccc 740

                                      
Query: 541 catcaagtttctggatctaagctgtgc 567
           |||||| ||||||||||||||||||||
Sbjct: 741 catcaaatttctggatctaagctgtgc 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)