BAC Information

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BAC

Clone NameMSMg01-083B14
Chromosome6 (Build37)
Map Location 22,614,336 - 22,614,863
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnd2, Tspan12, LOC100041358, Ing3, A430107O13Rik, LOC667307, Wnt16, D6Wsu176e, LOC100040948, LOC100040959
Downstream geneLOC668018, LOC668022, Ptprz1, Aass, EG668044, EG546894, EG668053, EG384356, Fezf1, Cadps2, Rnf133, Rnf148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083B14.T7 (MSMg01no083_b14.b1)MSMg01-083B14.TJ (MSMg01no083_b14.g1)
ACCAG303312AG303313
length719724
length of high quality
(start - end)		533 (39 - 571)526 (71 - 596)
definitionCHROMAT_FILE: MSMg01no083_b14.b1 PHD_FILE: MSMg01no083_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:44 2005CHROMAT_FILE: MSMg01no083_b14.g1 PHD_FILE: MSMg01no083_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTCA
TCAAGGTGACCGTCTGTGAACACCCTTCTTTTGTCTGCCTTTCTTGGAAC
TTTATAACCTCTTGGAATAAGAAAATGTCCTTTATCTTCTACTATATCTG
TTTCCTAAACGATATTAAATAGAGTCTTTAGTTTATTTGTCATTAGATAG
TAAAATGACAACATCAAACCTCTATGAGTTCATCAGGTTAAAACAAGGAT
GCAAAAGTTCTGAAAAGTCTAGTAAAAATGTTGTTCTCTTTTTACCGCAA
TTATATATAAATAAAAAGAAATACCCCACAGAACTTCCCCAGGTAATGAT
TTTCCCTCTCATTCATTTGGAACCTTCCCCCACTGTACAACTCATCCTGT
CCTCTGCCTGTTCCCTCATCTGCACTGCACATCTTATTGCTTACATCAGA
GGCATTGAGACCATGTTACTCTAATTCACCATTACCATTCACCTTCCCTA
TTGCAAAAACAGTTTTCCTTAACTTCTTTGCTGCAATCTTTAGCATCCTA
AGCTAACTGAACCAATAATGGTTTGATTAAAACTTCTGAAGATTTCACCT
TATATTTTTACATTATACTGTGACTAATACGCAAGCTATACGTCTGGACC
CCACTGGCATGACACCTGAGCTTGTGTAGCAAGCATCTCTTGTCTTAATT
ATGGGTACTATTGCTTTGG

TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAGAAG
CACCTGAGAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAA
ATCCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTC
TTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAAT
CGGTTGGTTCCTCAGAAAATAGGACATAGTACTACCGGAGGATCCTGCAA
TACCTCTCCTGGGCATATATCCAGAAGATGTTCCAATCGGTAAGAAGGAC
ACATGCTCCACTATGTTCATAGGAGCCTTATTTATAATATACAGAAGCTG
AAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATATAGAAAATGTGGT
ACATTTACACAATGGAGTACTACTCAGCTATTAAAAAATAATGAATTTAT
AAAATTCCTAGGCAAATGGATGGACCTGGAGGGTATCATCCTGAGTGAGG
TAACCCAATCACAAAAGAACTCAAACAATATGTACTTCACTGATAAGTGG
ATATTAGCCTAGAAACTTAGAATACAATTTTGCTAACACATGATACTCAA
GAAGAATGAAGACCCAAGTGTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_b14.b1 MSMg01no083_b14.b1 CHROMAT_FILE:
MSMg01no083_b14.b1 PHD_FILE: MSMg01no083_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:44 2005
         (533 letters)



>mm_chr6_22614131_22615063
          Length = 933

 Score =  990 bits (512), Expect = 0.0
 Identities = 524/528 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcatcaaggtgaccgtctgtgaacacccttcttttgtctgcctttcttggaacttt 65
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcatcaaggtgactgtctgtgaacacccttcttttgtctgcctttcttggaacttt 265

                                                                       
Query: 66  ataacctcttggaataagaaaatgtcctttatcttctactatatctgtttcctaaacgat 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ataacctcttggaataagaaaatgtcctttatcttctactatatctgtttcctaaacgat 325

                                                                       
Query: 126 attaaatagagtctttagtttatttgtcattagatagtaaaatgacaacatcaaacctct 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 attaaatagagtctttagtttatttgtcattagatagtaaaatgacaacatcaaacctct 385

                                                                       
Query: 186 atgagttcatcaggttaaaacaaggatgcaaaagttctgaaaagtctagtaaaaatgttg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 atgagttcatcaggttaaaacaaggatgcaaaagttctgaaaagtctagtaaaaatgttg 445

                                                                       
Query: 246 ttctctttttaccgcaattatatataaataaaaagaaataccccacagaacttccccagg 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttctctttttaccgcaattatatataaataaaaagaaataccccacagaacttccccagg 505

                                                                       
Query: 306 taatgattttccctctcattcatttggaaccttcccccactgtacaactcatcctgtcct 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 taatgattttccctctcattcatttggaaccttcccccactgtacaactcatcctgtcct 565

                                                                       
Query: 366 ctgcctgttccctcatctgcactgcacatcttattgcttacatcagaggcattgagacca 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ctgcctgttccctcatctgcactgcacatcttattgcttacatcagaggcattgagacca 625

                                                                       
Query: 426 tgttactctaattcaccattaccattcaccttccctattgcaaaaacagttttccttaac 485
           ||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 626 tgttactctaactcaccattaccactcaccttctctattgcaaaaacagttttccttaac 685

                                                           
Query: 486 ttctttgctgcaatctttagcatcctaagctaactgaaccaataatgg 533
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ttctttgctgcaatctttagcatcctaagctaactgaaccaataatgg 733


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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