Query= MSMg01no083_c06.b1 MSMg01no083_c06.b1 CHROMAT_FILE:
MSMg01no083_c06.b1 PHD_FILE: MSMg01no083_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:47 2005
(638 letters)
>mm_chr6_22005457_22006494
Length = 1038
Score = 810 bits (419), Expect = 0.0
Identities = 464/479 (96%)
Strand = Plus / Minus
Query: 6 gaattcacattgggctaggctgttagaacagtgcctgaatacttgatctgaaaggctttc 65
||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 479 gaattcacattggactagtctgttagaacagcgcctgaatacttgatctgaaaggctttc 420
Query: 66 tgagaaagcaggcattggaagtcagactccccaagtgtggctccttattagttctttcat 125
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 419 tgagaaagcaggcattggaagtcagactccccaagagtggctccttattagttctttcat 360
Query: 126 cactaagaggtcttagagaactgtcctagccgctgtgtgctgctgtctcttctgctgtaa 185
|||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||
Sbjct: 359 tactaagaggtcttagagaactgtcttagccgctgtgtgctactgtctcttccgctgtaa 300
Query: 186 agaaagcaccagtgcaagccggaatgctcaggactcgactggtgcaccctaaaacctcgc 245
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 299 agaaagcaccagtgcaagccggaatgctcaggacgcgactggtgcaccttaaaacctcgc 240
Query: 246 aagcgttagctgctgctatctctcatttgtatagccaccccagctaggccaactcaccct 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 aagcgttagctgctgctatctctcatttgtatagccaccccagctaggccaactcaccct 180
Query: 306 catctgggtgaatcatctcaggaactggcttcctccactcactcattgcttctgaagtgt 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 catctgggtgaatcatctcaggaactggcttcctccactcactcattgcttctgaagtgt 120
Query: 366 ttacttcaacatagctgccagggtaaagccggtaaaactgcaacgggattcctgtcgccc 425
|| |||||||||||||||||||| |||||| || ||||||||| ||||||||||||||||
Sbjct: 119 tttcttcaacatagctgccagggcaaagccagttaaactgcaatgggattcctgtcgccc 60
Query: 426 ctctactcaaaatcctccatcaacccaccccttcaccaaggacaaaatctgtggtcatt 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 ctctactcaaaatcctccatcaacccaccccttcaccaaggacaaaatctgtggtcatt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space: 645584
Effective search space used: 645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no083_c06.g1 MSMg01no083_c06.g1 CHROMAT_FILE:
MSMg01no083_c06.g1 PHD_FILE: MSMg01no083_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:47 2005
(592 letters)
>mm_chr6_21859016_21860008
Length = 993
Score = 1102 bits (570), Expect = 0.0
Identities = 588/594 (98%), Gaps = 3/594 (0%)
Strand = Plus / Plus
Query: 1 cttatcttcttctatctttctatatggtcctttctttatccgttcttaactctgtgagga 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 cttatcttcttctatctttctatatggtcctttctttatctgttcttaactctgtgagga 260
Query: 61 gcaggatgaagactgggagaggctggactgaagagcttactggtagaagaaaa-tgcaaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 gcaggatgaagactgggagaggctggactgaagagcttactggtagaagaaaaatgcaaa 320
Query: 120 gtacttccacttcttttgccctacatttctaagttgtaatcctttgaatttcagggttct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtacttccacttcttttgccctacatttctaagttgtaatcctttgaatttcagggttct 380
Query: 180 gtaccagaaattgccagaagtaaaattgtctagattgcccaatgaggtatttaaaacaat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaccagaaattgccagaagtaaaattgtctagattgcccaatgaggtatttaaaacaat 440
Query: 240 gttctctcctgtgaatttccacgagctactgatgtatgctttaacaacagttcctaatga 299
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 gttctctcctgtgaatttccacgagctactgatgtatgctttaacaacagtttctaatga 500
Query: 300 gtctaactttatgtatttgtttatttactccagaaaactatttttttgaaaagactatgg 359
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 gtctaactttatgtatttgtttatttactccagaaaactatttttt-gaaaagactatgg 559
Query: 360 ttgctacactgtgcatttggagattttaatcaaaatttatagtaaataagcttaactaca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttgctacactgtgcatttggagattttaatcaaaatttatagtaaataagcttaactaca 619
Query: 420 agaaccaatttgtgctagctactatacttttaatctaaaatataagttagaacaacttta 479
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 acaaccaatttgtgctagctactatacttttaatctaaaatataagttagaacaacttta 679
Query: 480 ggccattagttacttttatgtaattgcaataattcaaaacttactttctccttgaagact 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ggccattagttacttttatgtaattgcaataattcaaaacttactttctccttgaagact 739
Query: 540 ttacaaattgacaaccaacacagttcatttatataatcttgcctctt-aaaaaa 592
||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 740 ttacaaattgacaaccaacacagttcatttatataatcttgcctctttaaaaaa 793
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 993
Length adjustment: 10
Effective length of query: 582
Effective length of database: 983
Effective search space: 572106
Effective search space used: 572106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
