BAC Information

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BAC

Clone NameMSMg01-083L18
Chromosome6 (Build37)
Map Location 47,565,917 - 47,566,092
singlet/doubletsinglet
Overlap genenone
Upstream geneCntnap2, LOC622745, LOC100041064, LOC100041078, A930035D04Rik, Cul1, Ezh2
Downstream geneRn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083L18.T7 (MSMg01no083_l18.b1)MSMg01-083L18.TJ (MSMg01no083_l18.g1)
ACCAG303773AG303774
length738783
length of high quality
(start - end)
216 (149 - 364)65 (72 - 136)
definitionCHROMAT_FILE: MSMg01no083_l18.b1 PHD_FILE: MSMg01no083_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:33 2005CHROMAT_FILE: MSMg01no083_l18.g1 PHD_FILE: MSMg01no083_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATAATTTGCGGCGCTAAACGACTCCTATATCCAGAGAGATCCGCGGAAT
TCAGATGCTATCCAAAAATTTCTTTGGAATTAGTGCAATTGAGTTTTTAT
TGTTCCCTACTCATACACACACACACACACACACACACACACACACACAT
ATATATGTATATATATACATATATATATATATATATATATATATATATAT
ATACATATATACATACACATTCAGATACTCCACTACCCCACCACCCCTCC
TCCTCCAAGTATTATATACAATGTATTAAACCTTCTGGTTTGTTTGGGCT
CCCCAGAATTTTATGAAACTAGCTGACTTCATTATTCTTGGTTTCTTTAT
CTATTTACAATAAACAGCATAGATGGATAGACAAATAGATAGACTGATGA
TAGACAGACAGACAGACAGACAGACAGACAGACAGATAGATGTATATGTA
GCATGTTGTTTATCATGGGCTTTTTAAAACTACACACTACTTGTATACAC
ACATTTTTCTCCAGAAACATTTTGACAATAAACATTTTGCTAAATTTCTA
TACACCTCTTGCCCCTTAAATAACACAGTATGGTATTTCCTTTTTAATAA
TACTACTTCCCAGATGGTGCCTGATGGTACATTTCCTAATAACTCCCTCA
CTCCTATAGATAGAGGTCTGGAGGATTTATGTAGTATTTGACCATCCCTG
TTGTTACACATCTATCTTTAAAAGCCCATATTGGTAAA
AATACAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATCTCAACAGCATTATCTCAAGAGGATTC
CACCTCAGGTCGATCCGCAAGCCTCTGGCCCATCAGAGCAGGAGTGGGGT
GGGGTGGGCGTCTNTATCACTTTAGATCCCTTCTCCTATCCCCCTCTCCC
TCTTTCCCTCTACCTCTTTTTCCTCTTTTCTCCCTCCATTCACTATTTTT
TCTTTACATCACTATTTCTTTTATTAACACTACATTATAATAATTTCTCT
ATTTAATTATACAAATTAACACACTTTTTTATAATTCTTTATTAAATAAT
ATATATATTTTTTATTTTTCTCATAACCCCTATTTTTCTTATTTATTATA
ATATCTATTCCTCACCCATTTTTTTTTCCCATTTTATTATCTCTACATTT
TCCTTAATATTATTTTCTTACCACTTCATTTTTTCTCTTTTCTCACACCC
TCTCCTTCCATCTCTCCCACCATTCCTTTTATTAATATATACTTAGCAAT
ATTTATTTTCTTCATAGTCATATCCTATCTTCTATATAAATTATATATCA
ACTCTCACTATATATACTACTCATATCATTCATCCTTAATTTTCAAAATA
TCCTTTATTTTAATTCTTATTTCTATTATTATTAATATAAAACTATAAAC
TATAACAAATAATACCTTCTTACTACATATAATTTATCAATTTCCTATAC
TTATCCTCAATACTCTTACATCGTATTCATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_l18.b1 MSMg01no083_l18.b1 CHROMAT_FILE:
MSMg01no083_l18.b1 PHD_FILE: MSMg01no083_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:33 2005
         (216 letters)



>mm_chr6_47565677_47566292
          Length = 616

 Score =  325 bits (168), Expect = 1e-93
 Identities = 174/176 (98%)
 Strand = Plus / Plus

                                                                       
Query: 41  atatatatatatatacatatatacatacacattcagatactccactaccccaccacccct 100
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 241 atatatatatatatacatatatacatactcattcagatactccactaccccaccacccct 300

                                                                       
Query: 101 cctcctccaagtattatatacaatgtattaaaccttctggtttgtttgggctccccagaa 160
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 301 cctcctccaagtattatatacaatgtattaaaccttctggtttgtttgggctccccagta 360

                                                                   
Query: 161 ttttatgaaactagctgacttcattattcttggtttctttatctatttacaataaa 216
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttttatgaaactagctgacttcattattcttggtttctttatctatttacaataaa 416


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 616
Length adjustment: 9
Effective length of query: 207
Effective length of database: 607
Effective search space:   125649
Effective search space used:   125649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)