Query= MSMg01no084_p11.b1 MSMg01no084_p11.b1 CHROMAT_FILE:
MSMg01no084_p11.b1 PHD_FILE: MSMg01no084_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:08 2005
(595 letters)
>mm_chr6_19051902_19052896
Length = 995
Score = 1044 bits (540), Expect = 0.0
Identities = 584/612 (95%), Gaps = 21/612 (3%)
Strand = Plus / Minus
Query: 5 gaattctttattttttcaattgcatcacttaactcaagagtcagctccacagactagtca 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 gaattctttattttttaaattgcatcacttaactcaagagtcagctccacagactagtca 839
Query: 65 cagaaagacaaagtctgtattt---------------------ctaccactttcatccta 103
|||||||||||||||||||||| |||||||||||||||||
Sbjct: 838 cagaaagacaaagtctgtatttctaagcttacacagtggtgtactaccactttcatccta 779
Query: 104 ggaataagcttgatgtactgtatttctaacgtgttttactatgtaatgtttgttatttgt 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 ggaataagcttgatgtactgtatttctaacgtgttttactatgtaatgtttgttatttgt 719
Query: 164 agtgtttttactatgtatgtatgtaacatttgtaatgttactctatctcattaaatatta 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 agtgtttttactatgtatgtatgtaacatttgtaatgttactctatctcattaaatatta 659
Query: 224 agtggtctgaaataagctatccttagtccaaaataattttctgttatataactcactgct 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 agtggtctgaaataagctatccttagtccaaaataattttctgttatataactcactgct 599
Query: 284 cagatttctctgaatatttttttgttttcttacctttcactttagtcaactggagtacat 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 cagatttctctgaatatttttttgttttcttacctttcactttagtcaactggagtacat 539
Query: 344 caggtttctaacttctgatgataaatggcacgcatgaacttctgcccttgtccatattca 403
|||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||
Sbjct: 538 caggtttctaacttctgatgataaatggcaggtattaacttctgcccttgtccatattca 479
Query: 404 aagtggatactcagatgagtattggtatgagtttctggtattgtgagtccaatgagtcag 463
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 478 aagtggatactcagatgagtattggtatgagtttctggtattgtaagtccaatgagtcag 419
Query: 464 taggtctaaatatcatataaggatcctttttttctctaaaaaaattaatttggaaacttc 523
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 418 taggtctaaatatcatataaggatcctttttttctctaacaaaattaatttggaaacttc 359
Query: 524 accatataaacttcatagatacaagtctttaattgaaagttgcagtaatatagtgtttgt 583
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 358 accatataaacttcatagatacaagtctttaattgaaagttgtagtaatatagtgtttgt 299
Query: 584 tatttactttat 595
||||||||||||
Sbjct: 298 tatttactttat 287
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no084_p11.g1 MSMg01no084_p11.g1 CHROMAT_FILE:
MSMg01no084_p11.g1 PHD_FILE: MSMg01no084_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:08 2005
(579 letters)
>mm_chr6_18900179_18901157
Length = 979
Score = 1104 bits (571), Expect = 0.0
Identities = 577/579 (99%)
Strand = Plus / Plus
Query: 1 actctgtagactgggctggcctggaattcagaaatccacctgcctcttcctcccgagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctgtagactgggctggcctggaattcagaaatccacctgcctcttcctcccgagtgc 260
Query: 61 tgggattaagaaagcagtcttagtgaatctacaaagatcaaagtgacatcaagcatccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggattaagaaagcagtcttagtgaatctacaaagatcaaagtgacatcaagcatccct 320
Query: 121 tttcactatagttaaaaacacattactatttgtataccttctgtaatgatcaattagaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcactatagttaaaaacacattactatttgtataccttctgtaatgatcaattagaat 380
Query: 181 aatgctccattaattaaaactattccaataaagactgagtatatttttgaagaatattta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgctccattaattaaaactattccaataaagactgagtatatttttgaagaatattta 440
Query: 241 ttatgaaaaggacatctctcactttcatatctctaatattttcaaaatacatctttacca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 ttatgaaaaggacatctctcactttcatatctctaatattttcaaaatacatcattacca 500
Query: 301 ttatgttcttgcctaatttctctatttctaccattctgaacagggagttacttccatccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttatgttcttgcctaatttctctatttctaccattctgaacagggagttacttccatccc 560
Query: 361 atgtctcatatctaccatttttaggtgagtaataaaagaaaagtaacttggtaattgttc 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 atgtctcatatctaccatttttaggtgagtaatacaagaaaagtaacttggtaattgttc 620
Query: 421 cacagttgcactctaataatcttgccatagatcatgctattcttgtacatactctgaaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacagttgcactctaataatcttgccatagatcatgctattcttgtacatactctgaaat 680
Query: 481 aactaaatgcatataagactaagaagaaattgatacaagtttaatattaagaaaactcta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aactaaatgcatataagactaagaagaaattgatacaagtttaatattaagaaaactcta 740
Query: 541 atttatgatgtaaatatgaataaacatgaacattgcatt 579
|||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atttatgatgtaaatatgaataaacatgaacattgcatt 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
