BAC Information

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BAC

Clone NameMSMg01-085G13
Chromosome6 (Build37)
Map Location 88,428,086 - 88,428,220
singlet/doubletsinglet
Overlap geneRuvbl1
Upstream geneArhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1, Gata2, Dnajb8, Eefsec
Downstream geneSec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175, 4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839, 4930512J16Rik, Plxna1, Chchd6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-085G13.T7 (MSMg01no085_g13.b1)MSMg01-085G13.TJ (MSMg01no085_g13.g1)
ACCAG305004AG305005
length1,2481,327
length of high quality
(start - end)
80 (129 - 208)136 (123 - 258)
definitionCHROMAT_FILE: MSMg01no085_g13.b1 PHD_FILE: MSMg01no085_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:36:09 2005CHROMAT_FILE: MSMg01no085_g13.g1 PHD_FILE: MSMg01no085_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:36:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATGGGCCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCTTATGTTC
TGGGCTACCCTTGAAATCCATGGTAAACAGCACCTGTGATTCCCTGGCCT
TAATTCTCACACCCGAACCAAAACAAACAAAAACAAACAAACATAAACCA
TAGGGTTTTTTGTTTGTTTGTTTGTTTTTTACTCCAAGTAATATCTGATG
TGATTACGTGTCAAGACACCTTTATAATGTGATTTTGACAAGTCATAGTG
GCCATAATAGAGTTCATACTCACAACAATCTTCATAATTGCCCATAACTG
GACACTCACAGATAATTAATATATATAAATAAATCCTAGGTTTGCTTTTA
TCCAGAAAGCCATCTCCAAGCAAACTTTTATGTGTTATGTATTTTTTTTT
GAATAGGTATTGCCACATTGTCATTTTGTTAGTTCTTTGTGCCCATTTTC
TCTCCTTATCTCTGATGATTGTTTATTTATATGCTCTTTCTATTTGTCTT
TTGTTTCTTTATTCTTTTTTGTTCTATTTTACATCTCTGTCATGTTTTAT
ATCCCTTATCTCTTTTTTTTTTTTTTTCTTTCTTTTTTCTTTTTTTCTTT
ATAATACCTCATTTTTCTTTTTTTTTTTTAAATTTTTTTCATCTTTTTAT
ATAATTTATCTTATTTTATTTCATTTCTTAATAATATATTTATTCTTCTT
TTTATTATTATTCTCTTTTTTTTTTCTTAATTATTTCTATCATTCTTTAA
TATTCTTTTTCTTATTTTTTTTTCATTATACTTTTTTTTTTTTTTTTTAT
TATTCTTTTTTTCTTTTTTCTTTTTTCTCTTCCTTATATTATTTTATTTT
TTTATTATTTTATCTTTTTTTTTTATTTTATTTTATTTTTTTCTTTTTAT
ATTTTTTCTATTATTTTTTTTTTTTTTTTTCTTTTATTTTTTTTTTCTTT
TTTTTTATTTTTTTTATCTTTTTATACTTTCTTTTTTTCTTATTATTTTT
ATTGTTTTCTTTTTTTATTTTTTTTTATTCCTTTATTTGCTTTTCTTCTT
TTTTTTTTTCTTTTTTTTCTTTTTTACTTCTTTAATTTTTTTTTTATCTT
TTTTTTCTTTTTCTATATTTATATTTTCTTTTCTTTATTTCTATTTTTTT
TTTCTATTTTTTTTTCTTTTTATTTTTTTTTTTATTATCTCTCTTTATCA
TTAACTATACTCTAATTTTTTTTCTCTTTTCATTTATTTTCTTATATA
TAGTATGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCCCTTTTGGTATCACTATGCCTTTCTCCTGTTAGCGTT
CTGGCCGTAGGATGGGAGCCCCATTTGTTTTTCTTTTTAACTTAACCAGG
GAAAATGTACAGAAGTCATCAAGTATGTCGTCATCAGCTTCAGCTCAAAG
TTGGATTGGCATAAAGGCTTCATCTGTCCCCTTCAAGATTATTTGGAGCA
AATTGTATATAAGGTTTCCGGCGTGTGCGTGCGCGCGTGATTGCATGTGT
GCATCACATGTGCCTCCTTATTCCTTCCCCGTGAGCTTCCATCAGGCATC
TGAAGCTTCCTGGTACTACATTCTGTTAACATTATTTCAAGCTTATTTTT
TTTTTTGCATGTGACATCATATATGTATAACTTCTTTATTGTTTATCTTT
TCTCTTTTTCATTATTATTCTTCGATCCTTCTTGTATAGATGTTTCTCTC
TTTTATACTTTCTTTTTTCTCATATTTTATATTACCTTATATTTATCTAT
TTAATTTTCCTTTATTATTTCTTTTTTTTCATATTTCCTTTTTTTTATAA
TTCCTTTCTTTCTTTCTATTTTATCTATTCTATTTTTTCTTTCAATTTTA
TAGATTGCTTATTATTATTACTTTATTTTATTTCTTCTTTTCTTACTTTC
TTCTTTTAATTATTCTTTTTACCCTTTTTTTTATTTTTTACATTTTTTCT
CTTATTCTTTTTTCTTATATTCTTATTCCATCTCTTTAACCCCCTTTTTT
ATTATCCTTTCCTATTAATTTATTCATTTTCTTCTTTTTAATTTCATTTC
TTTATTCTTGTTTTTATATCTCTTTTATTAATTTATTTACCTTGTTTATT
TTTTCATATTTTTTCTCTATTTTTAATACTATTTTTATCTCTCTTCTCTT
TCTATTCTTATTTATCTCATTATTTCTTTAATATTTTATCCACTTTTCAT
TATTTTTATTACCTCTTTATTATTTTATCTTTATTAATATTTTCTAACTT
AATTCTAATCTTATTCTTTCGCTCTCTTTTTTTTTTTTTTATTATTTCTC
TCATTTTTACTTTCTATTCTTAATTTTATTATATTTTCTATTACTACTAT
TTCATTATCTTATTTTTACTATATTTCTTTTTCCTATTTATAACATATAA
TCAACTAATGTTCTTATATCCTTTTTTCTATTTTATTTCTATCTGTTATA
TATCTTTCCTATTTATTATTTCCTATTTATTTTTCCATTTCTTTACCTCT
TTTATACTGCTTTTTTCATTTTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no085_g13.g1 MSMg01no085_g13.g1 CHROMAT_FILE:
MSMg01no085_g13.g1 PHD_FILE: MSMg01no085_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:36:09 2005
         (136 letters)



>mm_chr6_88427886_88428421
          Length = 536

 Score =  253 bits (131), Expect = 2e-72
 Identities = 134/135 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttgtttttctttttaacttaaccagggaaaatgtacagaagtcatcaagtatgtcgtc 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 atttgtttttctttttaacttaaccagggaaaatgtacagaaatcatcaagtatgtcgtc 260

                                                                       
Query: 61  atcagcttcagctcaaagttggattggcataaaggcttcatctgtccccttcaagattat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcagcttcagctcaaagttggattggcataaaggcttcatctgtccccttcaagattat 320

                          
Query: 121 ttggagcaaattgta 135
           |||||||||||||||
Sbjct: 321 ttggagcaaattgta 335


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 136
Length of database: 536
Length adjustment: 8
Effective length of query: 128
Effective length of database: 528
Effective search space:    67584
Effective search space used:    67584
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)