BAC Information

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BAC

Clone NameMSMg01-085G15
Chromosome6 (Build37)
Map Location 48,813,383 - 48,813,598
singlet/doubletsinglet
Overlap geneEG666105
Upstream geneZfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a
Downstream geneAbp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210, Npy
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-085G15.T7 (MSMg01no085_g15.b1)MSMg01-085G15.TJ (MSMg01no085_g15.g1)
ACCAG305008AG305009
length1,3041,273
length of high quality
(start - end)
209 (121 - 329)268 (127 - 394)
definitionCHROMAT_FILE: MSMg01no085_g15.b1 PHD_FILE: MSMg01no085_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:36:10 2005CHROMAT_FILE: MSMg01no085_g15.g1 PHD_FILE: MSMg01no085_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:36:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTGGGCGCTAAAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTAA
CTTGTCCCCAGCCCTTAAAATCTAGAAAAATGTCCTCATGGCTAGGAATC
TCCCCTTTCTTGGGAACCCAAAAAAAAACTCAAGGTCTTGGGAGGTTCCT
TAATTTTTCTTTAAGCAAACAGCCCAGTTACTGTCTTTTCAAAGACTTCA
ACTCCACCTTCAGAAAAGGTAGCCTTACCACTGAGGGTAGGATTTGCTGC
TTTACCTAACTCCTATTGTCCATTTGCAGAAGTTCTGAGATCCCCACCCC
CAGACTTCCCAAGGCTGAGGCTGACAGAAGGAAGCTGCTTTTGACTACAT
TCCAAGTGATCATCACAAAGTTCAGTGTGCGAGCGGGCATGATGTTTTTT
TTCTGTAATCCTAGGCTCTGGGATGCATAGTCAGGGGAATTACCACCAGT
CTGAGGTCAGCCTGGTCAACAAAGCATGTTCCAGGCCAGTAATGACGTTC
ATTGCCATACTCTGTCTACTTAATCTAAGACACACTATAAAGACGCTGGT
ATTTCCCGTTGTCTCTATAATTTATATACACTAATTATATAATTAACATT
TACCTCTGCTAGTTTTATTGTATGTGTCGCTGTTTACTATCTCTCATACT
TTTTAGCCCTTATATCCTTTTGTACACATTTTAAAGTCTTCTACTTATAT
CTATTATCATCTGATATATTATATCTCTTATATAATTGCTAACCTCTATT
TCTATATTTGTCTTGCTTTTTATTAATATTTTTTTCTTTTAATGCTTATA
ATTCATTCCTCTGTTTTAATGCTGACTTCTTATTCAACTGTTTTTTATCT
TTATCTTTTTTACCATTATTTTATTATTTTTCATTTTCTTTTTCTATTTT
CAACATTTAATCTCTCTCTAATTATATTCTTTTTCTCTTTTCATTATATC
TTTTTCCTATCTTTCTATATTTTATATCTATTCTTATTTTTATATACTTT
ATTTTTTATTCATATCTCTCTTTTTATATTTTTATTATTCTTATTATAAG
TTTTTATATTTAATTTTATTTTTACTATTATACCTATATTTTTCTTTTAT
ATTTTCTACTTATTATTTTGTATTTATCTTATCTCTTTCTATTTTTATAT
TACGTTATTTTTTTAATTTTGTGCTTACTTAATTAATGTTAACTTTTTTT
TATTCTTATTATTCTTTCTTTCTGATTATTTCACTATTTTCTGNCTTCTC
ATTTAACTTTTACATGNTTATAATTGTTATTATCATCATTATCTACTTAT
CATT
TTTTAAAGCATGGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCTTTAATCTGAAGAAACAGACTGGGAGGAAGA
AGCAGCTCCTTTTGAGAAAAACCCCTACCAGCCAGGTAAAGTGCTAGCTA
ATCAGTTAAGGAAGCCAAAAGCGGCTGGCGAACGCCAGTTTGCTGATTGG
CCTCAGGGCAGTCGGCTTCAAGGTCCGCCCTATGCGGAGTCCCCGCCCTG
CGTAGTGCGTCAGCCCTGCGCACAGAGACAATGCGCAGAGAGGCAATGCG
CAGACTCATTCATTCCCAGAGAGGAACAAAGGACAATACCACAGGCATTT
CCAGTCTTTGAAGGAGCCGAGGGTGGGCGTGTCCACGCTCCGGTCGAATA
CTTTTTGATTAAAGAACTTGCCGAGTCGGTCCGTCTACACGGAACCAATG
CTAATCTTTACCTTGGTGCAGTTAGCCAGGCTCGCCGGCATAGCACTAAC
TCCTGCCGACTGGTCTACGTTCGCAAAAGCCGCTCTCCCTAGTATGGCCT
AATATATGCCATGGATAGCCCTTTGGCCTGAATCCGCATATGCGCATGCC
CGACCAAACGCATCTGCTTTGACTCCTGAGCAGAGAGATTGGACTCTTGA
CTTGTTCACGTATCCGTCACCTTCTTCCGTTGACCTGATTATCTATCATC
CTTGAACTCATGTCCATATTCCTCCTTCGGCTATTATGTTCTGGAAGTCG
TTCTCCCTAGTAGGTTGCATCATTGTTCTTTTTTTTAACTATATCTTGGG
TTCTCTTGACTCCTTTTTCTCATTTTGTATTTTTAATGTCTGTTCTCTTT
TAACCTTCTTTCTTGTCTTTTTTTATTTTTCTTCTCTCTTTTTTACATCT
CTTTCATCTTTTTATTCTATCTTTTATATTTTCTTTTTTATTTTCTATTA
TTTTTCTATTTTCTCTTCTCTCCTTCTATTCTTTTTTTTTTTTATTCCTT
CCTTTTCTTTTTTCTATTTTCTTTTCCTTTTATATTTCTTATTTTCTCTT
ACTCTTTTCTTCTCTTTTATCCTCTTTTTTCTTTCTTTNCTTATTTCATT
ACTTACTTCAATACTATTCTCTATATTTCCTTTTCACCTCTTTTCTACTA
TTTCCCTATTCTTACTCTCTCTTCTCTTCTACTTCTTTCTATTCTCCTTT
TTTCTAGTACTCTCATTTTCTCTTTTCTTTCTTCCATCTTNTCATTCCTC
CTCTCTTTCATCCCTTTCATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no085_g15.b1 MSMg01no085_g15.b1 CHROMAT_FILE:
MSMg01no085_g15.b1 PHD_FILE: MSMg01no085_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:36:10 2005
         (209 letters)



>mm_chr6_48813183_48813792
          Length = 610

 Score =  364 bits (188), Expect = e-105
 Identities = 206/216 (95%), Gaps = 7/216 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaaaaactcaaggtcttgggaggttccttaatttttctttaagcaaacagcccagtta 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaaaaactcaaggtcttgggaggtttcttaatttttctttaagcaaacagcccagtta 260

                                                                       
Query: 61  ctgtcttttcaaagacttcaactccaccttcagaaaaggtagccttaccactgagggtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtcttttcaaagacttcaactccaccttcagaaaaggtagccttaccactgagggtag 320

                                                                       
Query: 121 gatttgctgctttacctaactcctattgtccatttgcagaagttctgagatcc------- 173
           |||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct: 321 gatttgctgctttacctaactcctattgtccatttgcagaagttctgagatccgcccccc 380

                                               
Query: 174 ccacccccagacttcccaaggctgaggctgacagaa 209
           || |||||||||||||||||| ||||||||||||||
Sbjct: 381 ccccccccagacttcccaagggtgaggctgacagaa 416


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 610
Length adjustment: 9
Effective length of query: 200
Effective length of database: 601
Effective search space:   120200
Effective search space used:   120200
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)