Query= MSMg01no085_n08.b1 MSMg01no085_n08.b1 CHROMAT_FILE:
MSMg01no085_n08.b1 PHD_FILE: MSMg01no085_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:08 2005
(337 letters)
>mm_chr6_78116903_78117639
Length = 737
Score = 522 bits (270), Expect = e-152
Identities = 306/322 (95%), Gaps = 8/322 (2%)
Strand = Plus / Minus
Query: 20 gaattcagatcctcttgaagagcctttta----tgcccttaaccactgaaccattttttt 75
||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 550 gaattcagatcctcttgaagagc----taaaattgcccttaaccactgaaccattttttt 495
Query: 76 ccagcatcgttacttgccatacctaggacttatggaggatcaaggacagacttgtctgac 135
| ||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 494 ctagcattggtacttgccatacctaggacttatggaggttcaaggacagacttgtctgac 435
Query: 136 ttatgtcttttcgggtatggattgctagggagatggcatcatagtgggcctgaatacagg 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ttatgtcttttcgggtatggattgctagggagatggcatcatagtgggcctgaatacagg 375
Query: 196 agaaagagtttccaagatcaaacagagactagtgaaaggcctcttctgtttgttgacacc 255
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 374 agaaagagtttccaagattaaacagagactagtgaaagacctcttctgtttgttgacacc 315
Query: 256 caccccttactagaattcatcaaagtcctgacagatccttgctcctgtgacggattgatg 315
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 314 caccccttactagacttcatcaaagtcctgacagatccttgctcctgtgaaggattgatg 255
Query: 316 ccccagtgtagaagaatacaag 337
||||||||||||||||||||||
Sbjct: 254 ccccagtgtagaagaatacaag 233
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space: 238784
Effective search space used: 238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no085_n08.g1 MSMg01no085_n08.g1 CHROMAT_FILE:
MSMg01no085_n08.g1 PHD_FILE: MSMg01no085_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:08 2005
(481 letters)
>mm_chr6_77972204_77973083
Length = 880
Score = 824 bits (426), Expect = 0.0
Identities = 468/482 (97%), Gaps = 3/482 (0%)
Strand = Plus / Plus
Query: 1 tcactttattcataattatattttgttaaaaaccctctttctgtccatgtgaaaaattac 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 tcactttattcataattatattttgttaaaaaacctctttctgtccatgtgaaaaattac 260
Query: 61 tctgacttttgtagctatgtcaattgattgcatttttcactgacataaagcacatgggct 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 tctgacttttgtagctatgtcaattgactgcatttttcactgacataaagcacatgggct 320
Query: 121 cacttttaaaaaatcaaatatgtaaaggacagtaattacaagttggtgaagaactgagag 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 cacttttaaaaaatcaaatatgtaaaggacagtaattagaagttggtgaagaactgagag 380
Query: 181 taaaagacttatcattggactcttgaaaggaactaccaattgaaaggaggggagcaatga 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagagacttatcattggactcttgaaaggaactaccaattgaaaggaggggagcaatga 440
Query: 241 ctacaaaaaattcaaacagtcaatctatttgctattgctttccaatgggtgactatctgg 300
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 441 ctacaaaaaattcaaacagtcaatctatttgctattgctatccaatgggtgactatatgg 500
Query: 301 aagagattgtgcacgcattaaaggatggaattgaactgccagaatgttttgtatgaaact 360
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 aagagattgtgcatgcattaaaggaaggaattgaactgccagaatgttttgtatgaaact 560
Query: 361 atgttatcaaatctaac-tagcaagacacacaataaatagagtcggatgtcaatgatgga 419
||||||||||||||||| | ||||||||||||||||||||||| |||||| |||||||||
Sbjct: 561 atgttatcaaatctaacct-gcaagacacacaataaatagagt-ggatgttaatgatgga 618
Query: 420 aatttttaagtcaccttgaagaattattagctaaaaattcaacggagcaatataaccaaa 479
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 619 aatttttaagtcaccttgaagaattattagctaaaaattcaaaggagtaatataaccaaa 678
Query: 480 ca 481
||
Sbjct: 679 ca 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 880
Length adjustment: 10
Effective length of query: 471
Effective length of database: 870
Effective search space: 409770
Effective search space used: 409770
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
