BAC Information

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BAC

Clone NameMSMg01-086B12
Chromosome6 (Build37)
Map Location 60,623,205 - 60,623,552
singlet/doubletsinglet
Overlap genenone
Upstream geneEG634166, EG627108, EG434019, LOC671300, EG627178, LOC100041706, LOC100041717, A530053G22Rik, LOC667066, LOC100041726
Downstream geneSnca, ENSMUSG00000064018, Mmrn1, LOC100041756, LOC100041764, C130092O11Rik, LOC100042694
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086B12.T7 (MSMg01no086_b12.b1)MSMg01-086B12.TJ (MSMg01no086_b12.g1)
ACCAG305498AG305499
length689691
length of high quality
(start - end)
296 (59 - 354)485 (74 - 558)
definitionCHROMAT_FILE: MSMg01no086_b12.b1 PHD_FILE: MSMg01no086_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:41 2005CHROMAT_FILE: MSMg01no086_b12.g1 PHD_FILE: MSMg01no086_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACC
TGTGCCATACCGAATGGCAGAGGAACACCTGAAAAAAAGTCATCAGAAAA
ATGCAACTCAAAACAACCTTGAGATTCCACCTCACACCAGTCAGAATGGC
TAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAA
GAGGAACACTCCTTCATTGTTGGTGGGATTACAAGCTTGTACAACCACTC
TGGAAATCAGTTTGGCAGTTCCAAAGAAAATTGGAAATAATACTACCAGA
GGATCCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACCA
GTAAGAAGGATACCTGCTCCACTATGTTCATAGCAGCCTTATTTATAATA
GCCAGAAGCTGGAAAGAACCCATATGCCCCTCAACAGAGGAATGGATACA
GAAAATGTGGTACATTTACACAATGGAGTACTACTCAGATATTATAAGGA
ATGAATTTATGAAATTCCTAGGCCAATGGATGGACCTCATTCAGGGCATC
ATCCTGAATGAGGTAACACAATCACTAAGGAACTCACACAAAATGTACTC
ACTGATAAGTGGATATCAGCCCAAAAGCTTAGGACACCGAATATTTACAA
TCCCAATTGTGTAAACGCATGGAATCTCCAGAAAAAACA
CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTTTAGAGTCCTTCAAAATTATTTTT
ATTTTGGTGAATAAAATTTCATCTCTAATTGTCTTTTCATTTCATATATA
CTTTAATTTGAATTACAGCATAGTTTAAAGTAGAAAACTCTTAGAGAATA
AAACCTTAGGGCATTGGTGGCACATGCCTTTAATCCCAGCACTTGGGAGG
CAGAGGCAGGCAGATTTCTGAGCTCCAGGCCAGCCTGGTCTACAGAGTGA
GTTCCAGGACAGCCTGGGCTACACAGAGAAACCCTGTCTCAAAAAACGAG
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAATAAAACCTTAAAGCACAGAATAATATAATAATTGATTTT
TGGTTTTCTTTAAATGTGTGAATCATAACTCAAGTTAGAAAATTATTTTT
TTACATTCCTATATGATCAATTAGCAATTCAAAACAAGAATGTGTATAAG
AAATCAAATGAATGATGAACTAATGCAGGTGAACCAAAGGTCTTCCCTCA
ATACTAAGAATAAAACAGCTTTGGGAGTAAACACGTTAAACACATTAAAC
CTCTGTTAGTACAGGCTATGCATGCCCAGAATATGGAAGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_b12.g1 MSMg01no086_b12.g1 CHROMAT_FILE:
MSMg01no086_b12.g1 PHD_FILE: MSMg01no086_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:41 2005
         (485 letters)



>mm_chr6_60622668_60623552
          Length = 885

 Score =  615 bits (318), Expect = e-180
 Identities = 344/356 (96%), Gaps = 8/356 (2%)
 Strand = Plus / Minus

                                                                       
Query: 130 accttagggcattggtggcacatgcctttaatcccagcacttgggaggcagaggcaggca 189
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 885 accttagggcagtggtggcacatgcctttaatcccagcacttgggaggcagaggcaggcg 826

                                                                       
Query: 190 gatttctgagctccaggccagcctggtctacagagtgagttccaggacagcctgggctac 249
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 825 gatttctgagctccaggccagcctggtctacagagtgagttccaggacagactgggctac 766

                                                                       
Query: 250 acagagaaaccctgtctcaaaaaacgaggagagagagagagagagagagagagagagaga 309
           |||||||||||||||||||||| ||      | || ||||||||||||||||||||||||
Sbjct: 765 acagagaaaccctgtctcaaaatac------a-ag-gagagagagagagagagagagaga 714

                                                                       
Query: 310 gagagagagagagagagagagagagagaataaaaccttaaagcacagaataatataataa 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 gagagagagagagagagagagagagagaataaaaccttaaagcacagaataatataataa 654

                                                                       
Query: 370 ttgatttttggttttctttaaatgtgtgaatcataactcaagttagaaaattattttttt 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ttgatttttggttttctttaaatgtgtgaatcataactcaagttagaaaattattttttt 594

                                                                   
Query: 430 acattcctatatgatcaattagcaattcaaaacaagaatgtgtataagaaatcaaa 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 acattcctatatgatcaattagcaattcaaaacaagaatgtgtataagaaatcaaa 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)