BAC Information

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BAC

Clone NameMSMg01-086F10
Chromosome6 (Build37)
Map Location 95,624,364 - 95,624,673
singlet/doubletsinglet
Overlap geneSuclg2
Upstream geneLrig1, LOC625941, EG665865, LOC100043276, LOC100043680, Kbtbd8, LOC435912
Downstream geneLOC665886, LOC545867, C630007B19Rik, LOC100043685, 1700123L14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086F10.T7 (MSMg01no086_f10.b1)MSMg01-086F10.TJ (MSMg01no086_f10.g1)
ACCAG305679AG305680
length758764
length of high quality
(start - end)
84 (216 - 299)309 (132 - 440)
definitionCHROMAT_FILE: MSMg01no086_f10.b1 PHD_FILE: MSMg01no086_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:03 2005CHROMAT_FILE: MSMg01no086_f10.g1 PHD_FILE: MSMg01no086_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNTTTTNNNNNNTTTCCTTTTTNCCCCCTCCCTTCCTCATTCGCCT
CGGCTCATAATTTGGGCGCTAAACGACTCCTAATTTCGAAGTCGACGGAA
NCAANCANTTTGCAAAATAAGAGGACNNNCCNANCANGGAAAGGAAACCA
ACAANCAACAGATAGCCCCTCATGAGNCAGAAGACCNTCTGCAGAGCAAA
GGAAGCACCAGGAGCCAGCCTACAAAATGAAAGAAAACCCTTTGCAGTTG
TATATCCAGCACAGGATTAGTGACAAGAATATATAAAGAATTCAAGAATT
TATTCACACACAAAAACAAAACAAGGAAACCAATGTTAAAACAGGCTACA
GAACTGATCAGAAATTTTTTTTTTTAAGAAACACAAACAGCCAGGAAACA
CCCTAATTTTTTTTTGCCACACTTAGCCACTATAAAATGTACATTAAAAC
TACTTATAGATAGGGCTGTAAAGAAGAATCACCAGTTAAGCACACTGGTT
TGTTCTTGAGGGGACGCCGATTCAATTCCCAGCACCCACATGGCATCCTC
ATTACTAATCCGAACCTCCAGATCTAGGAGATCATAAAATCTCCTTTTGG
GGCGACTTGATACTACCTTCCTCCGTTTTCTTTTCTTTTTTCTTTATTAC
CGGCACTTAATTGCCACAATCATTATTTCCATTAACATTTGTTAACGAAG
AAGGTTTAATCACGTAATACTATTTTTTTTTTCCCTTTTTCTTTCGCTTC
TAAATAAG
NNNNNNTTTTTTTTTTTTTTTTCTTTTTTTTTTNCCTTTCTTCCCTCCTT
TCTCTTCTTTCTATGATATGTGTAXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCCATGTAGCCAAGGCTG
ACTTTCACTTACAGCAAATACAAGGATTAGAAGACTACACACCCACACAT
CTAGGTTATCCATGCTGGGCTTCACCTGGTGCTCCCTATATACAAATGAC
TTCTATATACAACACTCCATATCTAAGTCACATCCCTGGCCAGTGTTATG
TCCTTAACTCTAACTGAATACTTAGGGATATCTGATTACCATGAAGCTCT
AAAAGCTTCCATGTCCACTTCAACATCACTTCTTTTAATTCGCCTAACAA
GGCTGGCAGAAATCCATTCCATGGAAGAGCAAATGAAGGCTCAGGGTGGT
GAAAAGCTTGCTCAGGGTGAGGATGAAGAAGAATCCACACTCTAAACCCA
AGTGTGCCTGACTGCATGCAGAGCCTTTGAAAGTCAGCTGATAGGAAACT
GTTGACAACAGAGGTCGGGAAGCCATTGAGGAAAGGGACAGGTACTGGTG
GTGGGCCGGCAAAGTTTTTGTCGCCATGCACCCATGGCTTTTGCGCATTA
CGGACTACCCGGCCTCTTCGGTGTATAACTTGCATCTCTTGGTTGAAAAA
AACCTGCCTGTTATGTTTTTTCAACAATGCCATAAACAACTATTAACTCC
CATCAACTATTGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_f10.g1 MSMg01no086_f10.g1 CHROMAT_FILE:
MSMg01no086_f10.g1 PHD_FILE: MSMg01no086_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:03 2005
         (309 letters)



>mm_chr6_95624164_95624873
          Length = 710

 Score =  569 bits (294), Expect = e-166
 Identities = 306/310 (98%), Gaps = 1/310 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccccatgtagccaaggctgactttca-cttacagcaaatacaaggattagaagactacac 59
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 ccccatgtagccaaggctgactttcaacttacagcaaatacaaggattagaagactacac 260

                                                                       
Query: 60  acccacacatctaggttatccatgctgggcttcacctggtgctccctatatacaaatgac 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acccacacatctaggttatccatgctgggcttcacctggtgctccctatatacaaatgac 320

                                                                       
Query: 120 ttctatatacaacactccatatctaagtcacatccctggccagtgttatgtccttaactc 179
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 ttctatatacaacactccatatctaagtcacatccctggccagagttatgtccttaactc 380

                                                                       
Query: 180 taactgaatacttagggatatctgattaccatgaagctctaaaagcttccatgtccactt 239
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 taactgaatacttagggatatctgattaccatgaagttctaaaagcttccatgtccactt 440

                                                                       
Query: 240 caacatcacttcttttaattcgcctaacaaggctggcagaaatccattccatggaagagc 299
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caacatcacttcatttaattcgcctaacaaggctggcagaaatccattccatggaagagc 500

                     
Query: 300 aaatgaaggc 309
           ||||||||||
Sbjct: 501 aaatgaaggc 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 710
Length adjustment: 9
Effective length of query: 300
Effective length of database: 701
Effective search space:   210300
Effective search space used:   210300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)