Query= MSMg01no086_g05.b1 MSMg01no086_g05.b1 CHROMAT_FILE:
MSMg01no086_g05.b1 PHD_FILE: MSMg01no086_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:07 2005
(318 letters)
>mm_chr6_8930439_8931156
Length = 718
Score = 592 bits (306), Expect = e-173
Identities = 312/314 (99%)
Strand = Plus / Minus
Query: 5 gaattcttcaggagttacacccaaataatattaaacttctgaaataaaattcagccaaca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gaattcttcaggagttacacccaaataatattaaacttctgaaataaaattcagccaaca 459
Query: 65 ctaaataccaagaaatacacaacatgctttacatttttctctcatttgtattaatcatca 124
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 458 ctaaataccaagaaatacacaacacgctttacatttttctctcatttgtattaatcatca 399
Query: 125 ttgtattaatcatcttcaaaacagcccaggagttggagaaagctataccttaattacttg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ttgtattaatcatcttcaaaacagcccaggagttggagaaagctataccttaattacttg 339
Query: 185 acgctagcagtgctaagaaacattagggcagtggtaccaggtctgatagttagcattgaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 acgctagcagtgctaagaaacattagggcagtggtaccaggtctgatagttagcattgaa 279
Query: 245 ggccatgctctcatcaggtctggtaaatccagaccctccgccactcttcggcgccagctc 304
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ggccatgctttcatcaggtctggtaaatccagaccctccgccactcttcggcgccagctc 219
Query: 305 ccacaccaggagct 318
||||||||||||||
Sbjct: 218 ccacaccaggagct 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no086_g05.g1 MSMg01no086_g05.g1 CHROMAT_FILE:
MSMg01no086_g05.g1 PHD_FILE: MSMg01no086_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:07 2005
(587 letters)
>mm_chr6_8875115_8876101
Length = 987
Score = 1073 bits (555), Expect = 0.0
Identities = 579/591 (97%), Gaps = 8/591 (1%)
Strand = Plus / Plus
Query: 1 tcttttgaagatatctatatgtaccttttgtgtggcatattaagtaaacaccacagagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttttgaagatatctatatgtaccttttgtgtggcatattaagtaaacaccacagagac 260
Query: 61 ttacagataaaatgtatacagtagattttaaatagtggagatgtaagttttattaaatac 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatagataaaatgtatacagtagattttaaatagtggagatgtaagttttattaaatac 320
Query: 121 caaaaaatttataatcattgcttacaaatagtctgcttgatgactgacattttgatcctg 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaatatttataatcattgcttacaaatagtctgcttgatgactgacattttgatcctg 380
Query: 181 aaaaatgcagtggcagatccaagttggtgaggaaagtcccttcctgcttactaaatgcta 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaatgcagtggcagatctaagttggtgaggaaagtcccttcctgcttactaaatgcta 440
Query: 241 tgagttaataat----tttttatcctttcctcataagctttcttaaaatgactcaagctt 296
|||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagttaataatcccat----atcctttcctcataagctttcttaaaatgactcaagctt 496
Query: 297 gaggctataattaattaggtgacatttcatttcttgaatgcgtgttctgtaccctttagt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gaggctataattaattaggtgacatttcatttcttgaatgcgtgttctgtaccctttagt 556
Query: 357 ctgctttgcaatggttttgggcagatattgaaatctctgcacctttgtttggtagccttc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ctgctttgcaatggttttgggcagatattgaaatctctgcacctttgtttggtagccttc 616
Query: 417 tgtttctctgcttcttccatagacttagcattagcaatttcctgctctgctgctcttgcc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tgtttctctgcttcttccatagacttagcattagcaatttcctgctctgctgctcttgcc 676
Query: 477 tataaagtgagctgtaaggtttcatagtcttacacaagtcttgggtaagaacactttcat 536
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tataaagcgagctgtaaggtttcatagtcttacacaagtcttgggtaagaacactttcat 736
Query: 537 ttctctttataaaaatcaaccttctatttcttgcctgggtctgctttagca 587
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ttctctttataaaaatcaaccttctatttcttgcctgggtctgctttagca 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
