BAC Information

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BAC

Clone NameMSMg01-086L04
Chromosome6 (Build37)
Map Location 141,352,539 - 141,352,831
singlet/doubletsinglet
Overlap genePde3a
Upstream geneLOC269810, Plekha5, Aebp2, EG664868, LOC664875
Downstream geneSlco1c1, Slco1b2, EG435927, Slco1a4, LOC100042750, EG664913, Slco1a1, EG625716, Slco1a6, Slco1a5, Iapp, BC027061, Recql, Golt1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086L04.T7 (MSMg01no086_l04.b1)MSMg01-086L04.TJ (MSMg01no086_l04.g1)
ACCAG305938AG305939
length695767
length of high quality
(start - end)
487 (59 - 545)293 (138 - 430)
definitionCHROMAT_FILE: MSMg01no086_l04.b1 PHD_FILE: MSMg01no086_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:32 2005CHROMAT_FILE: MSMg01no086_l04.g1 PHD_FILE: MSMg01no086_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGGTGT
ATCACAGTTTAGTACATTGTCTTGGCTAGCTGTTCCCTTGATTAAAGTGA
AATGTCTTTCTTTATTCTTTCTGGTTGGTTTTAGTTTGTACTCTATTACA
TAAAGATGATAATACCTACTTGCTTTCTGATCTGATTGGAGCACTTTTTA
TCATCTTTTCATTTTAAAGTGATGCCTATCTTTAAATAGAGCTTCTTGTG
GGCAAAAAAAGATGATTTTGTTTCTTAACCCATTCAGCAATCCTGTGTCT
TCTGTTGAATTAAGACCACCAATATTTAAAATTATTAAATATAAAATAGT
GTATATTTATTTCAGCCTTTTTCTCTTTGTATTCTTAATCATACTTTATG
TTGCAGCAATTATATGTTCATTTTTTTTCTATAGCCTCTTGTATGTCTAT
TCCTCTCTTCAGTCTGAAGTATTGCATTAGAGATGATCTGTTGGGTATAA
AACTTTTAAGGCTGTTTGTATCATGGAAGTTTTTCTTTCTCCCTTCACTA
TACCAGACAGTTTTGCAGGATATAGTAGTCTAGGTTGCCAGACATGCCCT
TTAAGATCTAGAATGCATTGCTTAAGTTCTTCTGACTTTCAAGTTCCTAT
TGAGAAAGCAGCTATTAATTCTGATGGGTTGCCCCTTATATTTGA
NCCCCCCCTTTCCTTNNNCNNCCCCNCTTCCTTTCCCCCCNNNNNCNNCC
CTCTCNNNNNCTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCTTCTACAGT
AAGGATTTTTAGCCATCAGTTAAGCCTTGGCATTTTTTCTGCACAGATGT
CTGTTTTCCAGGGTTCCATTCAAAGGCACACTGCTGCTTCCCGTTACTGT
GGCAGCTTGCTACTGTATCCACTGAGGGCTCAGGCTGCACACCAGAGACT
GAGGGATGTGGGGGGATGTATCTGCTTCTTGCTGTTGGTGAGCTTCCTGG
CTGTAAGTGGCCCTTCAGTTTGTAATTATGGGAAGTGTGTGTGTGCAGGG
GAAATGAGTGATGTCTCATTCCTCTCAGTTCCTATAAAGATGTATATTTT
TTTTTCCTGAAAACAATTACTTTTTAACAAATAAAAATTCTGCAGTGTAG
GTCGAAGTCTCTCAGAGCTGTTCTTATTTTGGGGATAACTTGATACTACT
CGATACTTTGCTTTAAAAAATAAAAGCGCTAAATTTTGTAACTTTGAGGG
AACATTCCCTGTTAAATGAATTGAACCTGGATGTTTTGTTCCATTCTCAT
TTGTTTAGCTTTGTTTCGGCTATGATATGCCTTTTGTAAAATGGCTAGAT
TTGATTTGTGAACATCCTTTGTATTTAACAAGGGCCCCAGAACTTGCTTT
AAATTTGGGCCCTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_l04.g1 MSMg01no086_l04.g1 CHROMAT_FILE:
MSMg01no086_l04.g1 PHD_FILE: MSMg01no086_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:32 2005
         (293 letters)



>mm_chr6_141352339_141353031
          Length = 693

 Score =  567 bits (293), Expect = e-166
 Identities = 293/293 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtcttctacagtaaggatttttagccatcagttaagccttggcattttttctgcacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtcttctacagtaaggatttttagccatcagttaagccttggcattttttctgcacaga 260

                                                                       
Query: 61  tgtctgttttccagggttccattcaaaggcacactgctgcttcccgttactgtggcagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtctgttttccagggttccattcaaaggcacactgctgcttcccgttactgtggcagct 320

                                                                       
Query: 121 tgctactgtatccactgagggctcaggctgcacaccagagactgagggatgtggggggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctactgtatccactgagggctcaggctgcacaccagagactgagggatgtggggggat 380

                                                                       
Query: 181 gtatctgcttcttgctgttggtgagcttcctggctgtaagtggcccttcagtttgtaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtatctgcttcttgctgttggtgagcttcctggctgtaagtggcccttcagtttgtaatt 440

                                                                
Query: 241 atgggaagtgtgtgtgtgcaggggaaatgagtgatgtctcattcctctcagtt 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgggaagtgtgtgtgtgcaggggaaatgagtgatgtctcattcctctcagtt 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)