BAC Information

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BAC

Clone NameMSMg01-086L19
Chromosome6 (Build37)
Map Location 11,254,278 - 11,254,545
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040285, LOC667650, AA545190
Downstream geneNdufa4, Phf14, LOC100040844, EG625347, LOC435879
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086L19.T7 (MSMg01no086_l19.b1)MSMg01-086L19.TJ (MSMg01no086_l19.g1)
ACCAG305965AG305966
length710720
length of high quality
(start - end)
577 (33 - 609)265 (74 - 338)
definitionCHROMAT_FILE: MSMg01no086_l19.b1 PHD_FILE: MSMg01no086_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:35 2005CHROMAT_FILE: MSMg01no086_l19.g1 PHD_FILE: MSMg01no086_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTATACGACTCCTATAGTCCGAGGATCCGCGGAATTCTATCAG
ACTTTCCCAGAGATCTAATTCCAGTTCTGCACAAACTATTCCACAAAATA
GAAGTAGAAGGTACTCTACCCAACTTATTCTATGAAGCCACAATTACTCT
GATACCTAAACCACAGAAAGATCCAACAATGATAGAGAACTTCAGACCAA
TTTCCCTTTTGAATATCGATGAAAAATGCTCAATAAAATTCTCGCTAACC
GAATCCAAGAACACATTTAAAAAATCAACCATCCTGACCAAGTACGTTTT
ATTCCAGGGATGCAGGGGTGGTTTAATATACAAAAATCCATTACCGTAAT
CCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCCTTAG
ATGTCAAGAAAGCATTTGACAAAATCCAACACCCATTCATGATAAAAGTC
TTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAGGCAAT
CTACAGCAAACCAGTAGCCAACACCAAAGTAAATGGTGAGATGCTGGAAG
CAATCCCACTAAAATCAGGGACTAGACCCGGCTGCCCAATTTCTCCCTAT
CTATTCAACATTGTACTTGAAGTCCTAGCCAGAGCAATTTGACAACACAA
GGAGATCAAGGGGATACAAATTGGAAAAGAAGAAGTCAAATATCACTTTT
TGCAGACGAC
GATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCACATAGAATAGTTGAGTTTAAGACAATA
GAGTCTGCGCCCAGCAATTGTGCCATCTGTTGATTCTAAACTAAGATTGT
CTGGTGTTTTCCATTTGGGCAGCTCTGGTGGGTCGAAGGGAGAAGACTGA
TTACTGCGTGAGTGCTTTGATATTCCGGGGGGTGGGGGGAGGTATCCATT
GACTTTGATATTGATGGGATTCCACAGGGCGGGCCTAAGTCACAATGGAC
CTTTGTCTAACTATCTTTAATATCTTCACTTTACAGGCTGTGGAAATTCT
ATAACCTTCCTATGTGTATAGCCCGCCCGCATTCATTTTAGCTATCTATA
AACCACACAGTCTGCTTCCTTGATTTGAAAGCAGACAAAGCGGACTCTGA
GACAAGCACTTGTTGGGACTATAAGTTCAACCCTTCAGTCATTTAGTATG
TTGTTCTTTTTGCTATAGCCTAACAATACCTTCTTTTATTACTTTAACCG
AGTAACATACTTGATTCTTCTTTACCACCCTACATTTACCCCTTTACTCC
TGACGCTTTTCTATCCACTTTTCTTAGCTTAGCTCTGACTATTCTTTTAG
CCTCCATTTTCTTCTCCCCTCTACTGTAAATTCTTTTCCAACGATTTGCC
CCTTTTCCTTTTTTCTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_l19.g1 MSMg01no086_l19.g1 CHROMAT_FILE:
MSMg01no086_l19.g1 PHD_FILE: MSMg01no086_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:35 2005
         (265 letters)



>mm_chr6_11254078_11254745
          Length = 668

 Score =  426 bits (220), Expect = e-124
 Identities = 256/268 (95%), Gaps = 3/268 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   catagaatagttgagtttaagacaatagagtctgcgcccagcaattgtgccatctgttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 catagaatagttgagtttaagacaatagagtctgcgcccagcaattgtgtcatctgttga 260

                                                                       
Query: 61  ttctaaactaagattgtctggtgttttccatttgggcagctctggtgggtcgaagggaga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 ttctaaactaagattgtctggtgttttccatttgggcagctctggtgggtcggagggaga 320

                                                                       
Query: 121 agactgattactgcgtgagtgctttgatattccgg-ggggtggg-gggaggta-tccatt 177
           || ||||||||||||||||| |||||||||| ||| |||| ||| |||||| | ||||||
Sbjct: 321 aggctgattactgcgtgagtactttgatattgcggaggggggggagggagggaatccatt 380

                                                                       
Query: 178 gactttgatattgatgggattccacagggcgggcctaagtcacaatggacctttgtctaa 237
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 gactttgatattgatgggattccacagggtgggcctaagtcacaatggacctttgtctaa 440

                                       
Query: 238 ctatctttaatatcttcactttacaggc 265
           |||||||||||| |||||||||||||||
Sbjct: 441 ctatctttaataacttcactttacaggc 468


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 668
Length adjustment: 9
Effective length of query: 256
Effective length of database: 659
Effective search space:   168704
Effective search space used:   168704
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)