BAC Information

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BAC

Clone NameMSMg01-087C07
Chromosome6 (Build37)
Map Location 72,824,917 - 72,825,133
singlet/doubletsinglet
Overlap geneKcmf1
Upstream geneImmt, Ptcd3, Rpo1-4, LOC668057, St3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3
Downstream geneTmsb10, Dnahc6, Suclg1, Olfr210-ps1, 4931417E11Rik, LOC100043338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087C07.T7 (MSMg01no087_c07.b1)MSMg01-087C07.TJ (MSMg01no087_c07.g1)
ACCAG306258AG306259
length778776
length of high quality
(start - end)
208 (134 - 341)446 (128 - 573)
definitionCHROMAT_FILE: MSMg01no087_c07.b1 PHD_FILE: MSMg01no087_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:09 2005CHROMAT_FILE: MSMg01no087_c07.g1 PHD_FILE: MSMg01no087_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNCCCCTTTTCCCCTTCCCCCCCCCCC
AAAANNNNNNCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCAGGAACATTTCCCAGAAATTAGCAGAGAGACA
GTTGCATCAGTCAGGCTGTAGTTGTACTTGCATCCAGGCTGGTCTTCCAG
GTTGATGTTGTTCACCTTCCTGCTCATGCCCTTTCCTCAACAGCAAAAAA
AAAAAAAAAAATATATATATATATATATACACACATACATACATACATAC
ATACATACATACATACATACATACATACATACAGGGTAAGAAGAATAGTA
GAAAACTAATACATGCCGGTGTGCCGGTGCATGCACTGATAGGCAGAGGC
GCGGGTTCTCTTGAGTCAGAACAGTCTTTTTTTACCCCCCACCCCCCTTC
TCTCAAAAACCAGATCCGAATGCTCCCTTATTTTACACTGACAGCTAGAC
TCATCTTATCGATTTATATACCTACCGAGAACTCTAAAACACGGTCAGTT
ATAACCAGGCCTTCCCCGGAAGTTTTCCCCCTTTTCTAAACTTCTCGGGA
CTTTATAACTGACACGGTACTTGTTCTAACGCCATCTCCGCTAGAACACT
AATAAGAAGGTATTTGTTCCCTGATCTTACCTAAGTTGTGACCTGTCCAT
AATGAAACCATTATCCATATTCTTTTTCCCCCACATGTCCCTATAAATTC
CCCTTTATATTATATTGCTTCAACGCCG
NNNNNNNNNNNNNNNNNNNNCCCCCCCCCTTTCCTNNNNNNAAAATTCCC
TCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGAGAGCCAAGACTACATAGA
GAAACCCTGGCTCAAAAACAAGAAGGAAAGAAAGAAAGAAAGAAAGAAAG
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA
AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG
AAAGAAAGAAAGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA
AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGACACCACCACC
AACAAAAAATACAAAAACAAGCAAACAAACAAAACTAACCAATAAATAAA
ACAAAACAAAAACCTATTTCTCAAAGTTGCCTTGTCCTGTTTTGTGCTAA
TTATTTCCAGGCTTTTGCAGCAGAGCTAGGAAACACACACACACACACAC
ACACACACACACACACACACACCCACACACACACACACACTCACAATTTT
ATATCCCACCCTTTAGTTCTCAGTCAGACCTTACATTCTTTTCTCAGTTG
TCAAACCTCCTTTCCTTCCAGCTTTGAGAAATCTGTTTGTGTACCGACCA
TGCAATCACTTACCCTCGACACTCCAAATGCCAAATAACAGTTCCCAGTT
AGTACTCAGTGGCCTCCTCATCAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_c07.b1 MSMg01no087_c07.b1 CHROMAT_FILE:
MSMg01no087_c07.b1 PHD_FILE: MSMg01no087_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:09 2005
         (208 letters)



>mm_chr6_72824807_72825414
          Length = 608

 Score =  331 bits (171), Expect = 2e-95
 Identities = 201/221 (90%), Gaps = 17/221 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaattagcagagagacagttgcatcagtcaggctgtagttgtacttgcatccaggctggt 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aaatgagcagagagacagttgcatcagtcaggctgtagttgtacttgcatccaggctggt 268

                                                                       
Query: 61  cttccaggttgatgttgttcaccttcctgctcatgccctttcctcaacagc--------- 111
           |||||||||||||||||||||||||||||||||||||||||||||||||||         
Sbjct: 267 cttccaggttgatgttgttcaccttcctgctcatgccctttcctcaacagcaaaaaaaaa 208

                                                                       
Query: 112 ----aaaaaaaaaaaaaaaaatatatatatatatatatacacacatacatacatacatac 167
               ||||||||||||||||||||||||||||||||||    | ||||||| ||||||||
Sbjct: 207 aaaaaaaaaaaaaaaaaaaaatatatatatatatatat----atatacatatatacatac 152

                                                    
Query: 168 atacatacatacatacatacatacatacatacagggtaaga 208
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 atacatacatacatacatacatacatacatacagggtaaga 111


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 11
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 608
Length adjustment: 9
Effective length of query: 199
Effective length of database: 599
Effective search space:   119201
Effective search space used:   119201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)