BAC Information

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BAC

Clone NameMSMg01-087D20
Chromosome6 (Build37)
Map Location 68,913,028 - 68,913,181
singlet/doubletsinglet
Overlap geneIgk
Upstream geneIgkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83
Downstream geneIgkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077, Igkv13-57-2, Gm1418, Igkv13-57-1, Gm189, Igkv13-56-1, Igkv4-56, Igkv13-55-1, Gm1524, Igkv13-54-1, Igkv4-54, Gm1420, Igkv4-51, Gm1069, Igkv12-49, Igkv5-48, ENSMUSG00000029975, Igkv12-46, Igkv5-45, Igkv12-44, Igkv5-43, Igkv12-42, Igkv12-41, Igkv5-40-1, Igkv12-40, Gm1409, Igkv12-38
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087D20.T7 (MSMg01no087_d20.b1)MSMg01-087D20.TJ (MSMg01no087_d20.g1)
ACCAG306328AG306329
length748777
length of high quality
(start - end)
248 (23 - 270)157 (129 - 285)
definitionCHROMAT_FILE: MSMg01no087_d20.b1 PHD_FILE: MSMg01no087_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:17 2005CHROMAT_FILE: MSMg01no087_d20.g1 PHD_FILE: MSMg01no087_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACTCCTATACGGGTGCAGATCCGCGGAATTCTTTTGGTAGATCTGCACC
CCATTTTTAATAGGGATCTTTGGTTCTCTGAAATCTAATTACTTGAGGTT
TCATATCTATATATATGATATTAGCCCTCTATCCAATACAGCATTGGTAG
AGATGTTCTCCCAAACTGTGGGCTGTCACTTTGTTCTATTGATAGTGTCC
TTTGCCTTACAGAAGCTTTCAAGTTCAAGAAGAAGGAAGACTGTCTGGCT
AGTTTTGTGTCAACTTGACACAGGCTGCGGTTATCACAGAGAAAGGAGCT
TCAGTTGATGAAATGCCTCCATGAGATCCAACTGCAAGACATTTCCTCAA
TTATTGATCAAGGTGGATAGGCCCCTTGTGGTTGCAATCATCCCTTGCCC
TCCAATTCTTGGCCTCTATAAGAGAGTAGGCTGAGTAATCCATAGCATAT
CAGCCAGCATGAACTTCCCTCTACGTTCCCTGCCTTCATCTTCTTGCTCT
TTGACCTTTTCTGATCTCCAGTTCCCGACTTCCCTTTGATGAAGGTCCAT
CTCCTATTGGTACCTGTATATCCATAAATCTATTTTCCTCCCTTCCCCTT
TGTTTCCTTGTACCATTTATGCCTTTCCTTTCACATTTCTTCCCCCTCTT
TTCTCCTATTATCTCTTGGCTTTCATAGCCCCTACTTTTTCACTCACATT
TGCTATACCTTAGGCATTTCCGTACCCTTCCACCTCCTCTCTCGCACT
CGATGATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGTTATACAGAGAAAC
CCTGTCTCGAATAACCAATATTAAACCCAAAAAAAAGTAGCCCTTTATTT
ACAACTGAGTGCTCAGAAAACCATGTAATAATTCCCTTTAATGTAAGAAT
TGTCAGCATCTCTTAATATGTGTATCTCTTCAGTCTCTCACTTATTTTTC
TAATTCTTGATATACAATGAAATCGTTTTTTATGAAGAGAACAATGAGAC
AGGCATTTGTAAGGAAGATCTAGACACATATCTATGCTTCCTCATGGTTA
TGTTAACTTCTAGCCTATTTTTTAATCCCCCCCCCCCCTGCATCTAATTC
TTTACTCAATCTTATTCCCCCCCCTTCCACAAAAAAAAAAAAAACATCTT
TTGAGGGTGTGCCTGCATATTAATCTTAACTATGCACTTCCTACATTTCC
CAGCTTATTACTACTATCTGTTCTATTTTTCATCATTTGATCTTCATCGT
ATTCCGCCTTTACCTTCCTCTTCTACGAACGTATTTCCTTTTTTTTATGA
AACTTCTGCCTTCTTCTCTTTTAATTCTTTATTCGATCTCACCATTCCGC
TCCTTTTTTTAGACCCCTATCATCCTTATTCCCTCCCTCCTTTCTCTTTC
TTTCCACCCGCCCTATCTTTTCCGCCATTTTTTCCCCTCCCTTTTCCCTC
CCCCTTTACATTCCCTTTCCTTATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_d20.g1 MSMg01no087_d20.g1 CHROMAT_FILE:
MSMg01no087_d20.g1 PHD_FILE: MSMg01no087_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:17 2005
         (157 letters)



>mm_chr6_68912828_68913383
          Length = 556

 Score =  277 bits (143), Expect = 3e-79
 Identities = 152/155 (98%), Gaps = 1/155 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaaaaagtagccctttatttacaactgagtgctcagaaaaccatgtaataattccctt 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aaaaaaaagtagccatttatttacaactgagtgctcagaaaaccatgtaataattccctt 295

                                                                       
Query: 61  taatgtaagaattgtcagcatctcttaatatgtgtatctcttcagtctctcacttatttt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 294 taatgtaagaattgtcagcatctcttaatatgtgtatctcttcagtctctcactaatttt 235

                                              
Query: 121 tctaattcttgatatacaatgaaatcgttttttat 155
           ||||||||||||||||||||||||| |||||||||
Sbjct: 234 tctaattcttgatatacaatgaaat-gttttttat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 157
Length of database: 556
Length adjustment: 8
Effective length of query: 149
Effective length of database: 548
Effective search space:    81652
Effective search space used:    81652
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)