BAC Information

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BAC

Clone NameMSMg01-087J07
Chromosome6 (Build37)
Map Location 22,614,336 - 22,614,785
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnd2, Tspan12, LOC100041358, Ing3, A430107O13Rik, LOC667307, Wnt16, D6Wsu176e, LOC100040948, LOC100040959
Downstream geneLOC668018, LOC668022, Ptprz1, Aass, EG668044, EG546894, EG668053, EG384356, Fezf1, Cadps2, Rnf133, Rnf148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087J07.T7 (MSMg01no087_j07.b1)MSMg01-087J07.TJ (MSMg01no087_j07.g1)
ACCAG306571AG306572
length705714
length of high quality
(start - end)
454 (47 - 500)279 (80 - 358)
definitionCHROMAT_FILE: MSMg01no087_j07.b1 PHD_FILE: MSMg01no087_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:45 2005CHROMAT_FILE: MSMg01no087_j07.g1 PHD_FILE: MSMg01no087_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATCAAGTTCACTGTCTGTGAACACCCTTCTTTTGTCTGCCTTTC
TTGGAACTTTATAACCTCTTGCAATAAGAAAATGTCCTTTATCTTCTACT
ATATCTGTTTCCTAAACGATATTAAATAGAGTCTTTAGTTTATTTGTCAT
TAGATAGTAAAATGACAACATCAAACCTCTATGAGTTCATCAGGTTAAAA
CAAGGATGCAAAAGTTCTGAAAAGTCTAGTAAAAATGTTGTTCTCTTTTT
ACCGCAATTATATATAAATAAAAAGAAATACCCCACAGAACTTCCCCAGG
TAATGATTTTCCCTCTCATTCATTTGGAACCTTCCCCCACTGTACAACTC
ATCCTGTCCTCTGCCTGTTCCCTCATCTGCACTGCACATCTTATTGCTTA
CATCAGAGGCATTGAGACCATGTTACTCTAATTCATTATTACCATTCACC
TTCTCTATTGCAAAAACAGTTTTCCTTAACTTCTTTGCTGCAATCTCTAG
CATCCTAAGTTAACTGAACCAATAATGGTTTGATTAAAACTTCTGACGAT
TTCCCCTTACATTTTTACCTTATCCCGCGACTAAATCGCCAGTTATACCT
TTCGACCCCATTGGTTTGTCCCCTGAGCTTGTGTAGCAGCCATCACCCGT
CCTAA
CCTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCTGAGAAGCACCTGAGAAAATGTCCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTA
AGATCAAAAATCCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGA
GGAACACTCTTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTG
GAAATCAATCGGTTGGTTCCTCATAAAATAGGACATAGTACTACCGGAGG
ATCCTGCAATATCTCTCCTGGGCATATATCCAGAAGATGTTCCAATCGGT
AAGAAGGACACATGCTCTACTATGTTCATAGGAGTCTTATTTACAATACA
CTGAATCCTGATTCGAACCCAGATGCCTCCTCAGTAGAGGAATGGATATA
TAATATGTGTGACCTTTACCCCTTGGAATTCTATTCCGCCTTTTACCATT
TCATGAACTTACAAATTTCCTAGCGTAATGCATGGCCCTGTCTGTTATTC
CCCCGTAGTGAGCTCCCCCATTTTCCCATTAACTCCCCCCATTAGGTCTC
CTTGATCAGTGTATATTACCCTTACCTTTTTCCACCATAATTTTGTCCCC
CCTTTGTAACCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_j07.b1 MSMg01no087_j07.b1 CHROMAT_FILE:
MSMg01no087_j07.b1 PHD_FILE: MSMg01no087_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:45 2005
         (454 letters)



>mm_chr6_22614132_22614985
          Length = 854

 Score =  816 bits (422), Expect = 0.0
 Identities = 443/450 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatcaagttcactgtctgtgaacacccttcttttgtctgcctttcttggaacttt 64
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcaaggtgactgtctgtgaacacccttcttttgtctgcctttcttggaacttt 264

                                                                       
Query: 65  ataacctcttgcaataagaaaatgtcctttatcttctactatatctgtttcctaaacgat 124
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ataacctcttggaataagaaaatgtcctttatcttctactatatctgtttcctaaacgat 324

                                                                       
Query: 125 attaaatagagtctttagtttatttgtcattagatagtaaaatgacaacatcaaacctct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attaaatagagtctttagtttatttgtcattagatagtaaaatgacaacatcaaacctct 384

                                                                       
Query: 185 atgagttcatcaggttaaaacaaggatgcaaaagttctgaaaagtctagtaaaaatgttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgagttcatcaggttaaaacaaggatgcaaaagttctgaaaagtctagtaaaaatgttg 444

                                                                       
Query: 245 ttctctttttaccgcaattatatataaataaaaagaaataccccacagaacttccccagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttctctttttaccgcaattatatataaataaaaagaaataccccacagaacttccccagg 504

                                                                       
Query: 305 taatgattttccctctcattcatttggaaccttcccccactgtacaactcatcctgtcct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taatgattttccctctcattcatttggaaccttcccccactgtacaactcatcctgtcct 564

                                                                       
Query: 365 ctgcctgttccctcatctgcactgcacatcttattgcttacatcagaggcattgagacca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgcctgttccctcatctgcactgcacatcttattgcttacatcagaggcattgagacca 624

                                         
Query: 425 tgttactctaattcattattaccattcacc 454
           ||||||||||| |||  ||||||| |||||
Sbjct: 625 tgttactctaactcaccattaccactcacc 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)